C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 25, member 39
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000149777 Slc25a39-007 ENSMUSG00000018677 10090 - 11:102404484-102407315 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryTestisENSMUST00000149777
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Testis
ENSMUST00000149777 75.691±12.40 330.230±51.48 17.880±0.00 125.519±46.30 142.867±30.96 47.131±9.78 200.386±58.40 250.396±62.85 53.059±0.43 98.999±25.67 229.259±29.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B6 CIL_0009B6_0002 VISTA 11:102063033-102664797
CIL_0007ST CIL_0007ST_0002 VISTA 11:102292756-102896210
CIL_0005J9 CIL_0005J9_0002 CGP 11:102393403-102407946
CIL_0005J8 CIL_0005J8_0002 CGP 11:102402985-102437048

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005739 IDA mitochondrion
GO:0006810 IEA transport
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000225308 SLC25A39-001 protein_coding Homo_sapiens 0 643
ENST00000377095 SLC25A39-006 protein_coding Homo_sapiens 0 760
ENST00000537904 SLC25A39-005 protein_coding Homo_sapiens 0 558
ENST00000585695 SLC25A39-003 retained_intron Homo_sapiens 0 483
ENST00000586016 SLC25A39-008 protein_coding Homo_sapiens 0 411
ENST00000588049 SLC25A39-012 protein_coding Homo_sapiens 0 483
ENST00000588315 SLC25A39-002 retained_intron Homo_sapiens 0 412
ENST00000588767 SLC25A39-015 protein_coding Homo_sapiens 0 436
ENST00000590194 SLC25A39-007 protein_coding Homo_sapiens 0 643
ENST00000591006 SLC25A39-004 retained_intron Homo_sapiens 0 483
ENST00000593166 SLC25A39-016 nonsense_mediated_decay Homo_sapiens 6e-24 115

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