C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 25, member 39
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000123688 Slc25a39-005 ENSMUSG00000018677 10090 - 11:102404389-102407463 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B6 CIL_0009B6_0002 VISTA 11:102063033-102664797
CIL_0007ST CIL_0007ST_0002 VISTA 11:102292756-102896210
CIL_0005J9 CIL_0005J9_0002 CGP 11:102393403-102407946
CIL_0005J8 CIL_0005J8_0002 CGP 11:102402985-102437048

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000225308 SLC25A39-001 protein_coding Homo_sapiens 0 248
ENST00000377095 SLC25A39-006 protein_coding Homo_sapiens 0 248
ENST00000537904 SLC25A39-005 protein_coding Homo_sapiens 0 248
ENST00000585695 SLC25A39-003 retained_intron Homo_sapiens 0 254
ENST00000586016 SLC25A39-008 protein_coding Homo_sapiens 0 248
ENST00000588049 SLC25A39-012 protein_coding Homo_sapiens 0 248
ENST00000588315 SLC25A39-002 retained_intron Homo_sapiens 0 254
ENST00000588767 SLC25A39-015 protein_coding Homo_sapiens 0 248
ENST00000590194 SLC25A39-007 protein_coding Homo_sapiens 0 248
ENST00000591006 SLC25A39-004 retained_intron Homo_sapiens 0 254
ENST00000593166 SLC25A39-016 nonsense_mediated_decay Homo_sapiens 1e-25 121

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