C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pumilio RNA-binding family member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000178015 Pum2-202 ENSMUSG00000020594 10090 + 12:8674134-8752581 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000178015
Transcript ID Adipose Adrenal Bladder Brain Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000178015 3.424±0.00 11.653±0.00 10.272±4.82 15.574±3.85 4.273±0.88 4.334±0.64 6.014±1.46 6.306±1.31 2.317±0.52 9.623±3.10 8.610±1.30

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PO CIL_0008PO_0002 VISTA 12:8085675-8687404

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IDA RNA binding
GO:0005515 IPI protein binding
GO:0006417 IEA regulation of translation
GO:0010494 IDA cytoplasmic stress granule
GO:0034063 IDA stress granule assembly
GO:0048471 ISS perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000122308 pum1-201 protein_coding Danio_rerio 0 512
ENST00000257075 PUM1-001 protein_coding Homo_sapiens 0 726
ENST00000319801 PUM2-201 protein_coding Homo_sapiens 0 4608
ENST00000338086 PUM2-001 protein_coding Homo_sapiens 0 2630
ENST00000361078 PUM2-202 protein_coding Homo_sapiens 0 2307
ENST00000373741 PUM1-002 protein_coding Homo_sapiens 0 699
ENST00000373742 PUM1-011 protein_coding Homo_sapiens 0 726
ENST00000373747 PUM1-004 protein_coding Homo_sapiens 0 699
ENST00000403432 PUM2-002 protein_coding Homo_sapiens 0 2628
ENST00000420234 PUM2-007 processed_transcript Homo_sapiens 0 621
ENST00000424085 PUM1-014 protein_coding Homo_sapiens 0 726
ENST00000424110 PUM2-009 protein_coding Homo_sapiens 0 228
ENST00000426105 PUM1-010 protein_coding Homo_sapiens 0 699
ENST00000429419 PUM2-008 nonsense_mediated_decay Homo_sapiens 0 702
ENST00000432105 PUM2-005 nonsense_mediated_decay Homo_sapiens 0 534
ENST00000440538 PUM1-013 protein_coding Homo_sapiens 0 699
ENST00000440577 PUM2-003 protein_coding Homo_sapiens 0 4146
ENST00000442400 PUM2-006 protein_coding Homo_sapiens 0 1450
ENST00000446940 PUM2-004 nonsense_mediated_decay Homo_sapiens 0 390
ENST00000498419 PUM1-005 protein_coding Homo_sapiens 0 699
ENST00000525843 PUM1-012 protein_coding Homo_sapiens 0 946
ENST00000530669 PUM1-023 nonsense_mediated_decay Homo_sapiens 0 270

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