C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pumilio RNA-binding family member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000163569 Pum2-006 ENSMUSG00000020594 10090 + 12:8674421-8750001 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonKidneyLungOvaryPlacentaTestisENSMUST00000163569
Transcript ID Adipose Breast Colon Kidney Lung Ovary Placenta Testis
ENSMUST00000163569 4.264±0.24 8.821±2.47 7.204±3.18 4.132±0.00 5.155±0.00 18.797±7.72 5.559±0.00 7.692±0.66

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PO CIL_0008PO_0002 VISTA 12:8085675-8687404

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IDA RNA binding
GO:0005515 IPI protein binding
GO:0006417 IEA regulation of translation
GO:0010494 IDA cytoplasmic stress granule
GO:0034063 IDA stress granule assembly
GO:0048471 ISS perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000122308 pum1-201 protein_coding Danio_rerio 0 558
ENST00000257075 PUM1-001 protein_coding Homo_sapiens 0 904
ENST00000319801 PUM2-201 protein_coding Homo_sapiens 0 2503
ENST00000338086 PUM2-001 protein_coding Homo_sapiens 0 5144
ENST00000361078 PUM2-202 protein_coding Homo_sapiens 0 4822
ENST00000373741 PUM1-002 protein_coding Homo_sapiens 0 937
ENST00000373742 PUM1-011 protein_coding Homo_sapiens 0 913
ENST00000373747 PUM1-004 protein_coding Homo_sapiens 0 946
ENST00000403432 PUM2-002 protein_coding Homo_sapiens 0 5243
ENST00000420234 PUM2-007 processed_transcript Homo_sapiens 0 623
ENST00000424085 PUM1-014 protein_coding Homo_sapiens 0 848
ENST00000424110 PUM2-009 protein_coding Homo_sapiens 0 226
ENST00000426105 PUM1-010 protein_coding Homo_sapiens 0 937
ENST00000429419 PUM2-008 nonsense_mediated_decay Homo_sapiens 0 702
ENST00000432105 PUM2-005 nonsense_mediated_decay Homo_sapiens 0 534
ENST00000440538 PUM1-013 protein_coding Homo_sapiens 0 787
ENST00000440577 PUM2-003 protein_coding Homo_sapiens 0 2082
ENST00000442400 PUM2-006 protein_coding Homo_sapiens 0 1445
ENST00000446940 PUM2-004 nonsense_mediated_decay Homo_sapiens 0 390
ENST00000498419 PUM1-005 protein_coding Homo_sapiens 0 996
ENST00000525843 PUM1-012 protein_coding Homo_sapiens 0 706
ENST00000530669 PUM1-023 nonsense_mediated_decay Homo_sapiens 0 270

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