C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pumilio RNA-binding family member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000165293 Pum2-004 ENSMUSG00000020594 10090 + 12:8674275-8752557 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleTestisENSMUST00000165293
Transcript ID Brain Heart Kidney Liver Muscle Testis
ENSMUST00000165293 4.414±0.47 3.950±1.09 3.216±0.00 1.317±0.00 5.051±0.88 2.202±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PO CIL_0008PO_0002 VISTA 12:8085675-8687404

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IDA RNA binding
GO:0010494 IDA cytoplasmic stress granule
GO:0034063 IDA stress granule assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000122308 pum1-201 protein_coding Danio_rerio 0 512
ENST00000257075 PUM1-001 protein_coding Homo_sapiens 0 726
ENST00000319801 PUM2-201 protein_coding Homo_sapiens 0 4608
ENST00000338086 PUM2-001 protein_coding Homo_sapiens 0 2505
ENST00000361078 PUM2-202 protein_coding Homo_sapiens 0 2307
ENST00000373741 PUM1-002 protein_coding Homo_sapiens 0 699
ENST00000373742 PUM1-011 protein_coding Homo_sapiens 0 726
ENST00000373747 PUM1-004 protein_coding Homo_sapiens 0 699
ENST00000403432 PUM2-002 protein_coding Homo_sapiens 0 2505
ENST00000420234 PUM2-007 processed_transcript Homo_sapiens 0 497
ENST00000424085 PUM1-014 protein_coding Homo_sapiens 0 726
ENST00000424110 PUM2-009 protein_coding Homo_sapiens 2e-32 143
ENST00000426105 PUM1-010 protein_coding Homo_sapiens 0 699
ENST00000429419 PUM2-008 nonsense_mediated_decay Homo_sapiens 0 702
ENST00000432105 PUM2-005 nonsense_mediated_decay Homo_sapiens 0 534
ENST00000440538 PUM1-013 protein_coding Homo_sapiens 0 699
ENST00000440577 PUM2-003 protein_coding Homo_sapiens 0 4146
ENST00000442400 PUM2-006 protein_coding Homo_sapiens 0 1321
ENST00000446940 PUM2-004 nonsense_mediated_decay Homo_sapiens 0 390
ENST00000498419 PUM1-005 protein_coding Homo_sapiens 0 699
ENST00000525843 PUM1-012 protein_coding Homo_sapiens 0 946
ENST00000530669 PUM1-023 nonsense_mediated_decay Homo_sapiens 0 270

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