C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: single-pass membrane protein with aspartate rich tail 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000161892 Smdt1-002 ENSMUSG00000022452 10090 + 15:82346014-82349091 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastKidneyMuscleOvaryPlacentaTestisENSMUST00000161892
Transcript ID Bladder Brain Breast Kidney Muscle Ovary Placenta Testis
ENSMUST00000161892 18.951±2.89 42.025±0.00 10.881±0.00 18.407±0.00 25.642±5.33 20.469±0.21 39.299±12.25 16.983±4.76

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004BB CIL_0004BB_0002 CGP 15:82329532-82345743
CIL_00037D CIL_00037D_0002 CGP 15:82338942-82349091
CIL_0004BJ CIL_0004BJ_0002 CGP 15:82338959-82354291

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005739 IDA mitochondrion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000331479 SMDT1-001 protein_coding Homo_sapiens 0 196
ENST00000422252 SMDT1-003 nonsense_mediated_decay Homo_sapiens 0 281
ENST00000484235 SMDT1-002 retained_intron Homo_sapiens 0 196
ENST00000571525 SMDT1-001 protein_coding Homo_sapiens 0 196
ENST00000606595 SMDT1-005 processed_transcript Homo_sapiens 0 198
ENST00000607293 SMDT1-201 protein_coding Homo_sapiens 0 196
ENST00000608773 SMDT1-003 nonsense_mediated_decay Homo_sapiens 0 281
ENST00000615504 SMDT1-202 protein_coding Homo_sapiens 0 196

Loading