C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: single-pass membrane protein with aspartate rich tail 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000023086 Smdt1-001 ENSMUSG00000022452 10090 + 15:82345954-82349090 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023086
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023086 121.293±18.72 171.689±19.99 81.026±14.11 68.684±35.17 93.300±29.19 135.360±14.16 104.068±16.81 144.734±17.00 87.131±22.77 106.296±8.16 100.070±6.01 83.452±35.08 48.420±33.30 43.474±3.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004BB CIL_0004BB_0002 CGP 15:82329532-82345743
CIL_00037D CIL_00037D_0002 CGP 15:82338942-82349091
CIL_0004BJ CIL_0004BJ_0002 CGP 15:82338959-82354291

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005739 IDA mitochondrion
GO:0006851 ISS mitochondrial calcium ion transport
GO:0031305 ISS integral component of mitochondrial inner membrane
GO:0036444 IEA calcium ion transmembrane import into mitochondrion
GO:0051560 ISS mitochondrial calcium ion homeostasis
GO:1990246 ISS uniplex complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000331479 SMDT1-001 protein_coding Homo_sapiens 0 355
ENST00000422252 SMDT1-003 nonsense_mediated_decay Homo_sapiens 0 196
ENST00000484235 SMDT1-002 retained_intron Homo_sapiens 0 355
ENST00000571525 SMDT1-001 protein_coding Homo_sapiens 0 355
ENST00000606595 SMDT1-005 processed_transcript Homo_sapiens 0 283
ENST00000607293 SMDT1-201 protein_coding Homo_sapiens 0 355
ENST00000608773 SMDT1-003 nonsense_mediated_decay Homo_sapiens 0 196
ENST00000615504 SMDT1-202 protein_coding Homo_sapiens 0 355

Loading