C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: single-pass membrane protein with aspartate rich tail 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000162705 Smdt1-004 ENSMUSG00000022452 10090 + 15:82340986-82349007 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastOvaryPlacentaTestisENSMUST00000162705
Transcript ID Brain Breast Ovary Placenta Testis
ENSMUST00000162705 56.711±0.00 18.861±0.00 60.970±0.00 20.436±0.33 22.123±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004BB CIL_0004BB_0002 CGP 15:82329532-82345743
CIL_00037D CIL_00037D_0002 CGP 15:82338942-82349091
CIL_0004BJ CIL_0004BJ_0002 CGP 15:82338959-82354291

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000331479 SMDT1-001 protein_coding Homo_sapiens 0 196
ENST00000422252 SMDT1-003 nonsense_mediated_decay Homo_sapiens 0 198
ENST00000484235 SMDT1-002 retained_intron Homo_sapiens 0 196
ENST00000571525 SMDT1-001 protein_coding Homo_sapiens 0 196
ENST00000606595 SMDT1-005 processed_transcript Homo_sapiens 0 198
ENST00000607293 SMDT1-201 protein_coding Homo_sapiens 0 196
ENST00000608773 SMDT1-003 nonsense_mediated_decay Homo_sapiens 0 198
ENST00000615504 SMDT1-202 protein_coding Homo_sapiens 0 196

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