C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SEC11 homolog A (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000153053 Sec11a-007 ENSMUSG00000025724 10090 - 7:80915566-80916330 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000153053
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000153053 24.465±4.25 18.309±4.20 28.839±14.23 29.408±4.46 26.758±8.08 18.259±1.51 42.540±5.99 26.976±6.03 31.484±2.79 59.815±14.11 95.483±0.00 25.750±3.57

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008FE CIL_0008FE_0002 VISTA 7:80488938-81090184
CIL_0000N2 CIL_0000N2_0002 CGP 7:80890723-80905076
CIL_0003XQ CIL_0003XQ_0003 CGP 7:80902227-80947780
CIL_0003XP CIL_0003XP_0003 CGP 7:80904889-81045164

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000268220 SEC11A-001 protein_coding Homo_sapiens 0 403
ENST00000455959 SEC11A-002 protein_coding Homo_sapiens 0 403
ENST00000558217 SEC11A-009 protein_coding Homo_sapiens 0 403
ENST00000558924 SEC11A-006 retained_intron Homo_sapiens 0 412
ENST00000559376 SEC11A-007 retained_intron Homo_sapiens 8e-22 110
ENST00000559729 SEC11A-201 protein_coding Homo_sapiens 0 403
ENST00000560266 SEC11A-004 protein_coding Homo_sapiens 0 403
ENST00000560409 SEC11A-005 nonsense_mediated_decay Homo_sapiens 0 255

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