C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: plakophilin 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026991 Pkp4 10090 + 2:59160850-59355208 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000037903 Pkp4-004 59161008-59355208 protein_coding
  ENSMUST00000102754 Pkp4-001 59160850-59355205 protein_coding
  ENSMUST00000112577 Pkp4-010 59229749-59355205 protein_coding
  ENSMUST00000122888 Pkp4-008 59161927-59215031 processed_transcript
  ENSMUST00000123908 Pkp4-002 59160882-59338873 protein_coding
  ENSMUST00000124127 Pkp4-012 59342197-59348256 processed_transcript
  ENSMUST00000124725 Pkp4-011 59266184-59308237 processed_transcript
  ENSMUST00000126749 Pkp4-009 59200774-59215046 processed_transcript
  ENSMUST00000151452 Pkp4-013 59322616-59355205 processed_transcript
  ENSMUST00000168631 Pkp4-201 59160850-59355204 protein_coding
  ENSMUST00000183359 Pkp4-003 59160881-59354824 nonsense_mediated_decay
  ENSMUST00000183625 Pkp4-006 59161020-59305134 processed_transcript
  ENSMUST00000184332 Pkp4-005 59161043-59338876 nonsense_mediated_decay
  ENSMUST00000184705 Pkp4-007 59161927-59305366 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000037903ENSMUST00000102754ENSMUST00000112577ENSMUST00000151452ENSMUST00000168631ENSMUST00000183359ENSMUST00000183625ENSMUST00000184332
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000037903 4.341±0.00 1.274±0.00 N/A N/A 3.323±0.20 7.982±1.35 N/A 52.678±9.00 5.934±3.35 8.269±1.39 0.529±0.00 4.209±1.36 5.370±0.53 0.596±0.00
ENSMUST00000102754 5.590±1.63 N/A N/A 8.606±0.73 2.394±0.00 N/A 11.721±1.65 N/A 2.208±0.00 N/A 1.196±0.56 N/A N/A 2.318±1.17
ENSMUST00000112577 N/A 2.116±0.38 N/A N/A 2.423±0.20 N/A N/A N/A 3.530±0.50 N/A N/A 6.947±1.75 N/A N/A
ENSMUST00000151452 N/A N/A 9.978±1.08 54.606±0.00 3.531±0.00 N/A N/A N/A 3.208±0.39 N/A 0.850±0.14 11.473±6.59 14.330±8.69 5.643±0.00
ENSMUST00000168631 7.393±1.71 N/A 9.453±0.76 N/A 4.059±0.80 N/A 4.567±1.33 N/A 4.486±1.42 3.625±0.00 1.076±0.40 2.931±0.00 2.820±1.23 N/A
ENSMUST00000183359 3.330±0.24 2.077±0.70 N/A 8.810±6.82 1.774±0.00 2.590±0.00 4.241±0.20 14.758±2.11 2.960±1.02 3.679±0.20 0.671±0.07 4.527±0.36 4.578±1.77 0.906±0.00
ENSMUST00000183625 N/A 15.304±4.03 N/A N/A 30.772±4.58 44.102±7.71 N/A 222.114±46.80 29.155±3.13 62.675±10.48 N/A 50.452±6.06 N/A 8.921±0.93
ENSMUST00000184332 7.618±1.59 10.730±2.18 N/A 22.802±0.00 8.786±3.44 11.902±1.57 4.962±0.00 30.564±6.16 7.964±2.34 19.287±2.82 N/A 21.406±4.15 9.941±0.00 1.474±0.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005U5 CIL_0005U5_0002 CGP 2:59160850-59505020

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000922 ISS spindle pole
GO:0005737 ISS cytoplasm
GO:0005856 ISS cytoskeleton
GO:0005886 ISS plasma membrane
GO:0005911 ISS cell-cell junction
GO:0007043 IMP cell-cell junction assembly
GO:0009898 ISS cytoplasmic side of plasma membrane
GO:0014069 IDA postsynaptic density
GO:0016337 IEA single organismal cell-cell adhesion
GO:0030057 ISS desmosome
GO:0030496 ISS midbody
GO:0032321 IEA positive regulation of Rho GTPase activity
GO:0032467 IEA positive regulation of cytokinesis
GO:0044291 ISS cell-cell contact zone
GO:0048471 ISS perinuclear region of cytoplasm
GO:0051233 ISS spindle midzone
GO:0072686 ISS mitotic spindle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045331 pkp4 plakophilin 4 protein_coding Danio_rerio
ENSG00000144283 PKP4 plakophilin 4 protein_coding Homo_sapiens

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