C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: plakophilin 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000184332 Pkp4-005 ENSMUSG00000026991 10090 + 2:59161043-59338876 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000184332
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000184332 7.618±1.59 10.730±2.18 22.802±0.00 8.786±3.44 11.902±1.57 4.962±0.00 30.564±6.16 7.964±2.34 19.287±2.82 21.406±4.15 9.941±0.00 1.474±0.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005U5 CIL_0005U5_0002 CGP 2:59160850-59505020

Gene Ontology

GO IDEvidence TypeGO Description
GO:0014069 IDA postsynaptic density

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000389757 PKP4-001 protein_coding Homo_sapiens 0 2872
ENST00000389759 PKP4-002 protein_coding Homo_sapiens 0 2872
ENST00000411900 PKP4-009 nonsense_mediated_decay Homo_sapiens 0 311
ENST00000421462 PKP4-005 nonsense_mediated_decay Homo_sapiens 0 2189
ENST00000426248 PKP4-003 nonsense_mediated_decay Homo_sapiens 0 2241
ENST00000426801 PKP4P1-001 unprocessed_pseudogene Homo_sapiens 0 1053
ENST00000452162 PKP4-004 nonsense_mediated_decay Homo_sapiens 0 3177
ENST00000457109 PKP4-010 nonsense_mediated_decay Homo_sapiens 0 311
ENST00000462335 PKP4-011 processed_transcript Homo_sapiens 0 446
ENST00000480171 PKP4-006 retained_intron Homo_sapiens 0 196
ENST00000481115 PKP4-012 nonsense_mediated_decay Homo_sapiens 0 662
ENST00000492496 PKP4-016 retained_intron Homo_sapiens 0 647
ENST00000494945 PKP4-013 processed_transcript Homo_sapiens 0 481
ENST00000495123 PKP4-015 processed_transcript Homo_sapiens 5e-19 99

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