C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptotagmin VI
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000118563 Syt6-004 ENSMUSG00000027849 10090 + 3:103576142-103645569 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryENSMUST00000118563
Transcript ID Ovary
ENSMUST00000118563 0.434±0.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006X0 CIL_0006X0_0002 CGP 3:103575231-103738001

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0007340 IEA acrosome reaction
GO:0008021 IEA synaptic vesicle
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000343524 ATG4A-004 nonsense_mediated_decay Homo_sapiens 1e-34 152
ENST00000345734 ATG4A-002 protein_coding Homo_sapiens 8.00001e-42 176
ENST00000369547 SYT6-201 protein_coding Homo_sapiens 0 1279
ENST00000372232 ATG4A-001 protein_coding Homo_sapiens 0 558
ENST00000372246 ATG4A-003 nonsense_mediated_decay Homo_sapiens 0 558
ENST00000394892 ATG4A-005 protein_coding Homo_sapiens 0 558
ENST00000457035 ATG4A-006 protein_coding Homo_sapiens 0 424
ENST00000607941 SYT6-001 protein_coding Homo_sapiens 0 1279
ENST00000608203 SYT6-006 protein_coding Homo_sapiens 0 846
ENST00000608879 SYT6-008 protein_coding Homo_sapiens 0 630
ENST00000609117 SYT6-007 protein_coding Homo_sapiens 0 1277
ENST00000609577 SYT6-005 protein_coding Homo_sapiens 0 479
ENST00000610096 SYT6-002 nonsense_mediated_decay Homo_sapiens 0 1279
ENST00000610121 SYT6-003 nonsense_mediated_decay Homo_sapiens 0 1279
ENST00000610222 SYT6-004 protein_coding Homo_sapiens 0 1421

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