C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: syndecan binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000029912 Sdcbp-001 ENSMUSG00000028249 10090 + 4:6365650-6396284 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000029912
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000029912 15.734±3.53 14.615±2.57 17.724±0.61 11.293±0.99 13.045±2.79 13.311±2.38 6.209±0.10 11.166±1.26 9.933±7.79 17.582±0.13 3.013±0.00 15.093±1.61 16.173±7.62

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001T7 CIL_0001T7_0002 CGP 4:6265612-6408423
CIL_0002RG CIL_0002RG_0002 CGP 4:6365650-6454271

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001948 IEA glycoprotein binding
GO:0005109 IEA frizzled binding
GO:0005137 IMP interleukin-5 receptor binding
GO:0005515 IPI protein binding
GO:0005615 IEA extracellular space
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0005895 IMP interleukin-5 receptor complex
GO:0007265 IPI Ras protein signal transduction
GO:0008022 IEA protein C-terminus binding
GO:0019838 IEA growth factor binding
GO:0031982 IEA vesicle
GO:0042043 IEA neurexin family protein binding
GO:0042327 IEA positive regulation of phosphorylation
GO:0042802 IEA identical protein binding
GO:0042803 IEA protein homodimerization activity
GO:0045545 IEA syndecan binding
GO:0046875 IEA ephrin receptor binding
GO:0046982 IEA protein heterodimerization activity
GO:0047485 IEA protein N-terminus binding
GO:0050839 IEA cell adhesion molecule binding
GO:0070062 IEA extracellular vesicular exosome
GO:0072562 IEA blood microparticle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000038176 NSMAF-001 protein_coding Homo_sapiens 0.000000008 68
ENST00000260130 SDCBP-001 protein_coding Homo_sapiens 0 1520
ENST00000413219 SDCBP-002 protein_coding Homo_sapiens 0 1513
ENST00000424270 SDCBP-004 protein_coding Homo_sapiens 0 1168
ENST00000424643 SDCBPP2-001 processed_pseudogene Homo_sapiens 0 717
ENST00000447182 SDCBP-003 protein_coding Homo_sapiens 0 1506
ENST00000447267 SDCBP-012 protein_coding Homo_sapiens 0 217
ENST00000519115 SDCBP-013 retained_intron Homo_sapiens 0 662
ENST00000520168 SDCBP-006 protein_coding Homo_sapiens 0 224
ENST00000520228 SDCBP-009 retained_intron Homo_sapiens 0 403
ENST00000522243 SDCBP-008 processed_transcript Homo_sapiens 2e-28 130
ENST00000522843 SDCBP-010 retained_intron Homo_sapiens 0 436
ENST00000523483 SDCBP-005 protein_coding Homo_sapiens 0 1500

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