C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: xeroderma pigmentosum, complementation group A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000030013 Xpa-001 ENSMUSG00000028329 10090 - 4:46175222-46196311 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBreastColonKidneyLiverLungOvaryENSMUST00000030013
Transcript ID Adrenal Bladder Breast Colon Kidney Liver Lung Ovary
ENSMUST00000030013 21.191±3.18 18.522±1.08 19.672±2.72 14.451±3.34 18.819±4.37 9.631±0.77 22.321±3.36 36.796±6.55

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009AQ CIL_0009AQ_0002 VISTA 4:46052102-46653592
CIL_000853 CIL_000853_0002 VISTA 4:46066953-46671362
CIL_0009AR CIL_0009AR_0002 VISTA 4:46066953-46668597
CIL_0002JD CIL_0002JD_0002 CGP 4:46114746-46172403
CIL_00029T CIL_00029T_0002 CGP 4:46138613-46196311
CIL_00029U CIL_00029U_0002 CGP 4:46155347-46346412

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003684 ISS damaged DNA binding
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005662 ISS DNA replication factor A complex
GO:0005737 IEA cytoplasm
GO:0005794 IEA Golgi apparatus
GO:0006281 IMP DNA repair
GO:0006289 IMP nucleotide-excision repair
GO:0006979 IMP response to oxidative stress
GO:0008630 IMP intrinsic apoptotic signaling pathway in response to DNA damage
GO:0009411 IMP response to UV
GO:0009636 IMP response to toxic substance
GO:0019904 IEA protein domain specific binding
GO:0035264 IGI multicellular organism growth
GO:0042803 IEA protein homodimerization activity
GO:0045171 IEA intercellular bridge
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000375128 XPA-001 protein_coding Homo_sapiens 0 763
ENST00000462523 XPA-003 nonsense_mediated_decay Homo_sapiens 0 582
ENST00000496104 XPA-002 processed_transcript Homo_sapiens 0 239

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