C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: glypican 2 (cerebroglycan)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029510 Gpc2 10090 - 5:138264952-138280005 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000014089 Gpc2-004 138273660-138279965 protein_coding
  ENSMUST00000159067 Gpc2-007 138264952-138279958 nonsense_mediated_decay
  ENSMUST00000159350 Gpc2-008 138276641-138279963 processed_transcript
  ENSMUST00000159689 Gpc2-005 138273657-138279962 retained_intron
  ENSMUST00000161055 Gpc2-006 138275528-138278237 retained_intron
  ENSMUST00000161827 Gpc2-001 138273655-138280005 protein_coding
  ENSMUST00000161984 Gpc2-002 138273657-138279982 nonsense_mediated_decay
  ENSMUST00000162909 Gpc2-003 138273657-138279985 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainOvaryPlacentaTestisENSMUST00000014089ENSMUST00000159689ENSMUST00000161055ENSMUST00000161827ENSMUST00000162909
Transcript ID Adipose Bladder Brain Ovary Placenta Testis
ENSMUST00000014089 N/A N/A N/A N/A 2.840±0.00 N/A
ENSMUST00000159689 N/A N/A N/A N/A 2.823±0.14 N/A
ENSMUST00000161055 N/A N/A 110.833±18.90 N/A N/A N/A
ENSMUST00000161827 N/A 4.777±0.00 148.545±18.06 N/A 3.616±0.63 6.005±2.78
ENSMUST00000162909 5.449±0.09 4.921±1.48 49.504±9.64 3.176±0.59 2.131±0.56 0.382±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QI CIL_0008QI_0002 VISTA 5:137705744-138314172
CIL_0005BN CIL_0005BN_0003 CGP 5:138259658-138272840
CIL_0005CG CIL_0005CG_0002 CGP 5:138264921-138280005
CIL_0005CH CIL_0005CH_0002 CGP 5:138264952-138312393

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005783 IEA endoplasmic reticulum
GO:0005796 TAS Golgi lumen
GO:0005886 IEA plasma membrane
GO:0007224 IEA smoothened signaling pathway
GO:0030182 IEA neuron differentiation
GO:0031225 IEA anchored component of membrane
GO:0043395 IEA heparan sulfate proteoglycan binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000037150 gpc2 glypican 2 protein_coding Danio_rerio
ENSG00000213420 GPC2 glypican 2 protein_coding Homo_sapiens

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