C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glypican 2 (cerebroglycan)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000161055 Gpc2-006 ENSMUSG00000029510 10090 - 5:138275528-138278237 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainENSMUST00000161055
Transcript ID Brain
ENSMUST00000161055 110.833±18.90

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QI CIL_0008QI_0002 VISTA 5:137705744-138314172
CIL_0005BN CIL_0005BN_0003 CGP 5:138259658-138272840
CIL_0005CG CIL_0005CG_0002 CGP 5:138264921-138280005
CIL_0005CH CIL_0005CH_0002 CGP 5:138264952-138312393

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000292377 GPC2-001 protein_coding Homo_sapiens 2e-29 135
ENST00000471050 GPC2-003 processed_transcript Homo_sapiens 0.0000000003 71
ENST00000471717 GPC2-002 retained_intron Homo_sapiens 2e-37 161
ENST00000480087 GPC2-005 processed_transcript Homo_sapiens 2e-19 100
ENST00000490629 GPC2-007 retained_intron Homo_sapiens 5e-30 135

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