C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: syntaxin 4A (placental)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000156537 Stx4a-004 ENSMUSG00000030805 10090 + 7:127841978-127846618 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryTestisENSMUST00000156537
Transcript ID Ovary Testis
ENSMUST00000156537 19.010±0.00 3.538±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001X8 CIL_0001X8_0002 CGP 7:127785608-127824549
CIL_0001XW CIL_0001XW_0002 CGP 7:127803900-127849019
CIL_0001UH CIL_0001UH_0002 CGP 7:127824294-127876828

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005886 IDA plasma membrane
GO:0016079 TAS synaptic vesicle exocytosis
GO:0016323 IDA basolateral plasma membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000313843 STX4-001 protein_coding Homo_sapiens 0 749
ENST00000394998 STX4-003 protein_coding Homo_sapiens 0 809
ENST00000457779 STX4-005 protein_coding Homo_sapiens 0 311
ENST00000460668 STX4-009 nonsense_mediated_decay Homo_sapiens 0 713
ENST00000461455 STX4-007 retained_intron Homo_sapiens 4.99997e-41 172
ENST00000478150 STX4-008 retained_intron Homo_sapiens 2e-37 159
ENST00000487411 STX4-004 retained_intron Homo_sapiens 0 579
ENST00000493902 STX4-002 processed_transcript Homo_sapiens 0 407
ENST00000496977 STX4-006 nonsense_mediated_decay Homo_sapiens 0 852
ENST00000565483 STX4-014 retained_intron Homo_sapiens 0 353
ENST00000566353 STX4-013 retained_intron Homo_sapiens 0 276
ENST00000613541 STX4-018 protein_coding Homo_sapiens 0 248

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