C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: syntaxin 4A (placental)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000121705 Stx4a-002 ENSMUSG00000030805 10090 + 7:127841968-127849019 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000121705
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000121705 13.841±1.06 13.313±2.69 18.431±3.98 12.666±0.80 10.992±1.87 9.284±2.59 5.956±1.48 7.742±1.92 12.964±1.04 8.947±1.31 15.494±3.59 18.429±7.10 2.814±0.45

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001X8 CIL_0001X8_0002 CGP 7:127785608-127824549
CIL_0001XW CIL_0001XW_0002 CGP 7:127803900-127849019
CIL_0001UH CIL_0001UH_0002 CGP 7:127824294-127876828

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000149 IPI SNARE binding
GO:0005484 IEA SNAP receptor activity
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005802 IDA trans-Golgi network
GO:0005886 IDA plasma membrane
GO:0006886 IEA intracellular protein transport
GO:0009986 IDA cell surface
GO:0016021 IEA integral component of membrane
GO:0016079 TAS synaptic vesicle exocytosis
GO:0016323 IDA basolateral plasma membrane
GO:0031201 ISS SNARE complex
GO:0035493 IDA SNARE complex assembly
GO:0035749 IDA myelin sheath adaxonal region
GO:0043219 IDA lateral loop
GO:0048471 IDA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000313843 STX4-001 protein_coding Homo_sapiens 0 1055
ENST00000394998 STX4-003 protein_coding Homo_sapiens 0 939
ENST00000457779 STX4-005 protein_coding Homo_sapiens 0 385
ENST00000460668 STX4-009 nonsense_mediated_decay Homo_sapiens 0 604
ENST00000461455 STX4-007 retained_intron Homo_sapiens 0 263
ENST00000478150 STX4-008 retained_intron Homo_sapiens 2e-33 147
ENST00000487411 STX4-004 retained_intron Homo_sapiens 0 795
ENST00000493902 STX4-002 processed_transcript Homo_sapiens 0 623
ENST00000496977 STX4-006 nonsense_mediated_decay Homo_sapiens 0 756
ENST00000565483 STX4-014 retained_intron Homo_sapiens 0 244
ENST00000566353 STX4-013 retained_intron Homo_sapiens 2e-39 167
ENST00000613541 STX4-018 protein_coding Homo_sapiens 0 339

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