C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: syntaxin 4A (placental)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000142849 Stx4a-008 ENSMUSG00000030805 10090 + 7:127843598-127848677 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderOvaryPlacentaTestisENSMUST00000142849
Transcript ID Bladder Ovary Placenta Testis
ENSMUST00000142849 27.638±7.39 33.720±12.38 46.247±13.21 7.873±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001X8 CIL_0001X8_0002 CGP 7:127785608-127824549
CIL_0001XW CIL_0001XW_0002 CGP 7:127803900-127849019
CIL_0001UH CIL_0001UH_0002 CGP 7:127824294-127876828

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000313843 STX4-001 protein_coding Homo_sapiens 0 616
ENST00000394998 STX4-003 protein_coding Homo_sapiens 0 616
ENST00000460668 STX4-009 nonsense_mediated_decay Homo_sapiens 0 315
ENST00000487411 STX4-004 retained_intron Homo_sapiens 0 616
ENST00000493902 STX4-002 processed_transcript Homo_sapiens 0 569
ENST00000496977 STX4-006 nonsense_mediated_decay Homo_sapiens 0 466

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