C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA polymerase II associated protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000099529 Rpap1-001 ENSMUSG00000034032 10090 - 2:119763959-119787528 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000099529
Transcript ID Adipose Bladder Breast Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000099529 1.020±0.00 0.810±0.00 0.912±0.00 2.317±0.00 0.661±0.28 0.988±0.24 1.987±0.00 2.215±0.00 1.203±0.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005IS CIL_0005IS_0003 CGP 2:119751320-119787537
CIL_0005F5 CIL_0005F5_0002 CGP 2:119763304-119818104

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003899 IEA DNA-directed RNA polymerase activity
GO:0005634 IEA nucleus
GO:0032774 IEA RNA biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000304330 RPAP1-001 protein_coding Homo_sapiens 0 3101
ENST00000561603 RPAP1-004 protein_coding Homo_sapiens 0 2045
ENST00000562303 RPAP1-005 nonsense_mediated_decay Homo_sapiens 0 2745
ENST00000563293 RPAP1-011 retained_intron Homo_sapiens 0 254
ENST00000565167 RPAP1-006 retained_intron Homo_sapiens 0 950
ENST00000566863 RPAP1-008 protein_coding Homo_sapiens 0 396
ENST00000567866 RPAP1-010 protein_coding Homo_sapiens 0 483
ENST00000568413 RPAP1-015 processed_transcript Homo_sapiens 0 436

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