C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA polymerase II associated protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000139311 Rpap1-003 ENSMUSG00000034032 10090 - 2:119766859-119787519 retained_intron

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartLiverLungMuscleOvaryENSMUST00000139311
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary
ENSMUST00000139311 1.161±0.01 3.696±0.00 0.835±0.02 1.280±0.00 1.605±0.86 1.806±0.12 0.457±0.00 0.865±0.20 1.474±0.36 0.755±0.24 4.017±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005IS CIL_0005IS_0003 CGP 2:119751320-119787537
CIL_0005F5 CIL_0005F5_0002 CGP 2:119763304-119818104

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000304330 RPAP1-001 protein_coding Homo_sapiens 0 2745
ENST00000561603 RPAP1-004 protein_coding Homo_sapiens 0 2045
ENST00000562303 RPAP1-005 nonsense_mediated_decay Homo_sapiens 0 2750
ENST00000563293 RPAP1-011 retained_intron Homo_sapiens 0 254
ENST00000565167 RPAP1-006 retained_intron Homo_sapiens 0 771
ENST00000566863 RPAP1-008 protein_coding Homo_sapiens 0 396
ENST00000567866 RPAP1-010 protein_coding Homo_sapiens 0 483
ENST00000568413 RPAP1-015 processed_transcript Homo_sapiens 0 436

Loading