C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S19
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000138662 Rps19-002 ENSMUSG00000040952 10090 + 7:24884635-24887759 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; TestisENSMUST00000138662
Transcript ID Testis
ENSMUST00000138662 0.323±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003WP CIL_0003WP_0002 CGP 7:24870057-24889806
CIL_0003W3 CIL_0003W3_0002 CGP 7:24884371-24902197

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000221975 RPS19-005 protein_coding Homo_sapiens 2e-32 143
ENST00000415286 RPS19P1-001 processed_pseudogene Homo_sapiens 6e-32 141
ENST00000457967 RP11-389O22.4-001 processed_pseudogene Homo_sapiens 5e-22 108
ENST00000480487 RPS19P3-001 processed_pseudogene Homo_sapiens 2e-26 122
ENST00000593863 RPS19-006 protein_coding Homo_sapiens 2e-32 143
ENST00000598261 RPS19-007 protein_coding Homo_sapiens 6e-35 150
ENST00000598399 RPS19-008 nonsense_mediated_decay Homo_sapiens 4e-32 143
ENST00000598466 RPS19-004 retained_intron Homo_sapiens 1.4013e-45 187
ENST00000598742 RPS19-001 protein_coding Homo_sapiens 9.80909e-45 185
ENST00000600467 RPS19-002 protein_coding Homo_sapiens 1e-32 143
ENST00000601492 RPS19-003 protein_coding Homo_sapiens 1.4013e-45 185

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