C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S19
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000108429 Rps19-006 ENSMUSG00000040952 10090 + 7:24884714-24889806 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainMuscleOvaryPlacentaTestisENSMUST00000108429
Transcript ID Adipose Adrenal Brain Muscle Ovary Placenta Testis
ENSMUST00000108429 44.062±6.51 25.183±8.88 44.899±0.00 69.331±17.72 233.421±13.81 171.379±84.05 21.463±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003WP CIL_0003WP_0002 CGP 7:24870057-24889806
CIL_0003W3 CIL_0003W3_0002 CGP 7:24884371-24902197

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005730 ISS nucleolus
GO:0006412 IEA translation
GO:0022627 ISS cytosolic small ribosomal subunit
GO:0030218 ISS erythrocyte differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000221975 RPS19-005 protein_coding Homo_sapiens 0 693
ENST00000405355 RP11-346C16.4-001 processed_pseudogene Homo_sapiens 0 466
ENST00000415286 RPS19P1-001 processed_pseudogene Homo_sapiens 0 564
ENST00000455650 RP11-445N18.3-001 processed_pseudogene Homo_sapiens 0 427
ENST00000457967 RP11-389O22.4-001 processed_pseudogene Homo_sapiens 0 385
ENST00000477321 RP11-289K10.1-001 processed_pseudogene Homo_sapiens 0 484
ENST00000480487 RPS19P3-001 processed_pseudogene Homo_sapiens 0 551
ENST00000593863 RPS19-006 protein_coding Homo_sapiens 0 723
ENST00000598261 RPS19-007 protein_coding Homo_sapiens 0 361
ENST00000598399 RPS19-008 nonsense_mediated_decay Homo_sapiens 0 257
ENST00000598466 RPS19-004 retained_intron Homo_sapiens 0 265
ENST00000598742 RPS19-001 protein_coding Homo_sapiens 0 706
ENST00000600467 RPS19-002 protein_coding Homo_sapiens 0 348
ENST00000601492 RPS19-003 protein_coding Homo_sapiens 0 265

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