C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ataxin 7-like 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000107134 Atxn7l3-002 ENSMUSG00000059995 10090 - 11:102289300-102295312 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderLiverOvaryPlacentaENSMUST00000107134
Transcript ID Adipose Bladder Liver Ovary Placenta
ENSMUST00000107134 2.133±0.26 2.973±1.03 2.230±0.00 8.699±2.68 1.560±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B6 CIL_0009B6_0002 VISTA 11:102063033-102664797
CIL_0003L7 CIL_0003L7_0003 CGP 11:102284931-102296631
CIL_0004D4 CIL_0004D4_0003 CGP 11:102289300-102319742

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000124 ISS SAGA complex
GO:0003713 ISS transcription coactivator activity
GO:0006351 IEA transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0016578 IEA histone deubiquitination
GO:0030374 IEA ligand-dependent nuclear receptor transcription coactivator activity
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:0071819 IEA DUBm complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000104118 atxn7l3-201 protein_coding Danio_rerio 0 462
ENST00000311910 RP11-30M20.1-001 processed_pseudogene Homo_sapiens 0 880
ENST00000389384 ATXN7L3-001 protein_coding Homo_sapiens 0 3232
ENST00000454077 ATXN7L3-003 protein_coding Homo_sapiens 0 2806
ENST00000519948 ATXN7L3B-001 protein_coding Homo_sapiens 5.04467e-44 185
ENST00000587022 ATXN7L3-005 retained_intron Homo_sapiens 0 235
ENST00000587097 ATXN7L3-002 protein_coding Homo_sapiens 0 1482
ENST00000589607 ATXN7L3-007 retained_intron Homo_sapiens 0 326
ENST00000589805 ATXN7L3-011 protein_coding Homo_sapiens 0 765
ENST00000590169 ATXN7L3-004 protein_coding Homo_sapiens 0 802
ENST00000590537 ATXN7L3-006 protein_coding Homo_sapiens 0 475
ENST00000591295 ATXN7L3-009 protein_coding Homo_sapiens 0 2036
ENST00000593073 ATXN7L3-012 processed_transcript Homo_sapiens 0 684

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