C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ataxin 7-like 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000145484 Atxn7l3-004 ENSMUSG00000059995 10090 - 11:102289300-102293444 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLungMuscleOvaryENSMUST00000145484
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Lung Muscle Ovary
ENSMUST00000145484 4.158±1.38 10.751±0.45 10.295±5.42 6.144±2.03 1.806±0.00 2.166±0.24 6.026±2.20 1.327±0.00 11.841±4.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B6 CIL_0009B6_0002 VISTA 11:102063033-102664797
CIL_0003L7 CIL_0003L7_0003 CGP 11:102284931-102296631
CIL_0004D4 CIL_0004D4_0003 CGP 11:102289300-102319742

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000311910 RP11-30M20.1-001 processed_pseudogene Homo_sapiens 0 514
ENST00000389384 ATXN7L3-001 protein_coding Homo_sapiens 0 2087
ENST00000454077 ATXN7L3-003 protein_coding Homo_sapiens 0 2087
ENST00000587022 ATXN7L3-005 retained_intron Homo_sapiens 0 222
ENST00000587097 ATXN7L3-002 protein_coding Homo_sapiens 0 560
ENST00000589607 ATXN7L3-007 retained_intron Homo_sapiens 0 431
ENST00000590537 ATXN7L3-006 protein_coding Homo_sapiens 0 791
ENST00000591295 ATXN7L3-009 protein_coding Homo_sapiens 0 2010
ENST00000593073 ATXN7L3-012 processed_transcript Homo_sapiens 0 684

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