C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ataxin 7-like 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000073234 Atxn7l3-001 ENSMUSG00000059995 10090 - 11:102289300-102296631 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000073234
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000073234 4.196±0.80 6.063±0.13 26.316±14.43 2.345±0.21 6.646±1.25 3.053±1.27 2.663±0.91 3.489±1.99 2.824±0.17 3.202±1.19 6.706±4.75 12.118±8.43 2.864±1.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B6 CIL_0009B6_0002 VISTA 11:102063033-102664797
CIL_0003L7 CIL_0003L7_0003 CGP 11:102284931-102296631
CIL_0004D4 CIL_0004D4_0003 CGP 11:102289300-102319742

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000124 ISS SAGA complex
GO:0003713 ISS transcription coactivator activity
GO:0006351 IEA transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0016578 IEA histone deubiquitination
GO:0030374 IEA ligand-dependent nuclear receptor transcription coactivator activity
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:0071819 IEA DUBm complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000104118 atxn7l3-201 protein_coding Danio_rerio 0 462
ENST00000311910 RP11-30M20.1-001 processed_pseudogene Homo_sapiens 0 880
ENST00000389384 ATXN7L3-001 protein_coding Homo_sapiens 0 3009
ENST00000454077 ATXN7L3-003 protein_coding Homo_sapiens 0 2806
ENST00000519948 ATXN7L3B-001 protein_coding Homo_sapiens 0 200
ENST00000587022 ATXN7L3-005 retained_intron Homo_sapiens 0 235
ENST00000587097 ATXN7L3-002 protein_coding Homo_sapiens 0 1864
ENST00000589607 ATXN7L3-007 retained_intron Homo_sapiens 0 326
ENST00000589805 ATXN7L3-011 protein_coding Homo_sapiens 0 765
ENST00000590169 ATXN7L3-004 protein_coding Homo_sapiens 0 804
ENST00000590537 ATXN7L3-006 protein_coding Homo_sapiens 0 475
ENST00000591295 ATXN7L3-009 protein_coding Homo_sapiens 0 2036
ENST00000593073 ATXN7L3-012 processed_transcript Homo_sapiens 0 684

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