C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Sjogren syndrome antigen B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000112260 Ssb-003 ENSMUSG00000068882 10090 + 2:69861686-69867552 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryPlacentaENSMUST00000112260
Transcript ID Ovary Placenta
ENSMUST00000112260 57.960±6.01 47.114±2.30

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007VY CIL_0007VY_0002 VISTA 2:69698509-70299848
CIL_0004SC CIL_0004SC_0002 CGP 2:69821944-69871846
CIL_0004SJ CIL_0004SJ_0002 CGP 2:69861562-69885615

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003723 IDA RNA binding
GO:0005634 IDA nucleus
GO:0006396 IEA RNA processing
GO:0030529 IEA ribonucleoprotein complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000260956 SSB-001 protein_coding Homo_sapiens 0 704
ENST00000409333 SSB-003 protein_coding Homo_sapiens 0 697
ENST00000413002 SSB-006 nonsense_mediated_decay Homo_sapiens 0 479
ENST00000414531 RP11-382H24.2-001 processed_pseudogene Homo_sapiens 0 483
ENST00000417292 SSB-005 protein_coding Homo_sapiens 0 547
ENST00000420252 AC013470.6-001 processed_pseudogene Homo_sapiens 0 619
ENST00000422006 SSB-004 protein_coding Homo_sapiens 0 701
ENST00000438469 RP11-325P15.2-001 processed_pseudogene Homo_sapiens 0 625
ENST00000455793 RP11-3D23.1-001 processed_pseudogene Homo_sapiens 0 405
ENST00000461708 SSB-007 retained_intron Homo_sapiens 0 479
ENST00000468600 SSB-008 retained_intron Homo_sapiens 0 248
ENST00000468627 RP11-12N13.1-001 processed_pseudogene Homo_sapiens 0 274

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