C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Sjogren syndrome antigen B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000132186 Ssb-002 ENSMUSG00000068882 10090 + 2:69861623-69871510 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainHeartKidneyLiverMusclePlacentaTestisENSMUST00000132186
Transcript ID Bladder Brain Heart Kidney Liver Muscle Placenta Testis
ENSMUST00000132186 18.156±2.20 21.255±8.52 1.610±0.00 1.956±0.82 21.288±13.74 4.376±0.80 23.450±10.58 19.284±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007VY CIL_0007VY_0002 VISTA 2:69698509-70299848
CIL_0004SC CIL_0004SC_0002 CGP 2:69821944-69871846
CIL_0004SJ CIL_0004SJ_0002 CGP 2:69861562-69885615

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003723 IDA RNA binding
GO:0005634 IDA nucleus
GO:0006396 IEA RNA processing
GO:0030529 IEA ribonucleoprotein complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000260956 SSB-001 protein_coding Homo_sapiens 0 606
ENST00000409333 SSB-003 protein_coding Homo_sapiens 0 599
ENST00000410097 METTL5-004 protein_coding Homo_sapiens 0 206
ENST00000413002 SSB-006 nonsense_mediated_decay Homo_sapiens 0 479
ENST00000414531 RP11-382H24.2-001 processed_pseudogene Homo_sapiens 0 390
ENST00000417292 SSB-005 protein_coding Homo_sapiens 0 497
ENST00000420252 AC013470.6-001 processed_pseudogene Homo_sapiens 0 514
ENST00000422006 SSB-004 protein_coding Homo_sapiens 0 603
ENST00000438469 RP11-325P15.2-001 processed_pseudogene Homo_sapiens 0 538
ENST00000455793 RP11-3D23.1-001 processed_pseudogene Homo_sapiens 0 302
ENST00000461708 SSB-007 retained_intron Homo_sapiens 0 479
ENST00000468600 SSB-008 retained_intron Homo_sapiens 0 248
ENST00000468627 RP11-12N13.1-001 processed_pseudogene Homo_sapiens 0 274
ENST00000470621 SSB-013 retained_intron Homo_sapiens 0 278
ENST00000474273 SSB-009 retained_intron Homo_sapiens 0 248
ENST00000490914 SSB-011 retained_intron Homo_sapiens 0 387
ENST00000494051 SSB-012 retained_intron Homo_sapiens 0 206

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