C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Sjogren syndrome antigen B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000132603 Ssb-005 ENSMUSG00000068882 10090 + 2:69868779-69871510 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverMuscleOvaryPlacentaTestisENSMUST00000132603
Transcript ID Brain Liver Muscle Ovary Placenta Testis
ENSMUST00000132603 56.302±0.00 32.004±14.97 5.825±0.00 78.442±32.80 67.330±59.09 39.884±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007VY CIL_0007VY_0002 VISTA 2:69698509-70299848
CIL_0004SC CIL_0004SC_0002 CGP 2:69821944-69871846
CIL_0004SJ CIL_0004SJ_0002 CGP 2:69861562-69885615

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000260956 SSB-001 protein_coding Homo_sapiens 0 479
ENST00000409333 SSB-003 protein_coding Homo_sapiens 0 479
ENST00000410097 METTL5-004 protein_coding Homo_sapiens 0 206
ENST00000420252 AC013470.6-001 processed_pseudogene Homo_sapiens 0 448
ENST00000470621 SSB-013 retained_intron Homo_sapiens 0 272
ENST00000474273 SSB-009 retained_intron Homo_sapiens 0 248
ENST00000490914 SSB-011 retained_intron Homo_sapiens 0 387
ENST00000494051 SSB-012 retained_intron Homo_sapiens 0 206

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