C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Sjogren syndrome antigen B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000156057 Ssb-004 ENSMUSG00000068882 10090 + 2:69863291-69869150 processed_transcript

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastENSMUST00000156057
Transcript ID Breast
ENSMUST00000156057 4.333±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007VY CIL_0007VY_0002 VISTA 2:69698509-70299848
CIL_0004SC CIL_0004SC_0002 CGP 2:69821944-69871846
CIL_0004SJ CIL_0004SJ_0002 CGP 2:69861562-69885615

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000260956 SSB-001 protein_coding Homo_sapiens 0 536
ENST00000409333 SSB-003 protein_coding Homo_sapiens 0 536
ENST00000413002 SSB-006 nonsense_mediated_decay Homo_sapiens 0 412
ENST00000414531 RP11-382H24.2-001 processed_pseudogene Homo_sapiens 0 381
ENST00000417292 SSB-005 protein_coding Homo_sapiens 0 494
ENST00000420252 AC013470.6-001 processed_pseudogene Homo_sapiens 0 468
ENST00000422006 SSB-004 protein_coding Homo_sapiens 0 536
ENST00000438469 RP11-325P15.2-001 processed_pseudogene Homo_sapiens 0 492
ENST00000455793 RP11-3D23.1-001 processed_pseudogene Homo_sapiens 0 298
ENST00000461708 SSB-007 retained_intron Homo_sapiens 0 412
ENST00000468600 SSB-008 retained_intron Homo_sapiens 0 265
ENST00000468627 RP11-12N13.1-001 processed_pseudogene Homo_sapiens 0 268

Loading