C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000L0_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000005001-ENSDARG00000096687 CGP 7955 12:48745086-48786108
GeneTranscriptPositionBiotype
ENSDARG00000005001 (grem2)
gremlin 2, cysteine knot superfamily 		ENSDART00000024960 (grem2-201) 48745086-48760401 protein_coding
ENSDARG00000096687 (RGS7 (2 of 2))
regulator of G-protein signaling 7 		ENSDART00000153431 (RGS7 (2 of 2)-001) 48783416-48786108 protein_coding
CIL_0000L0_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000180875-ENSG00000182901 CGP 9606 1:240489573-241357230
GeneTranscriptPositionBiotype
ENSG00000180875 (GREM2)
gremlin 2, DAN family BMP antagonist 		ENST00000318160 (GREM2-001) 240489573-240612149 protein_coding
ENSG00000182901 (RGS7)
regulator of G-protein signaling 7 		ENST00000348120 (RGS7-004) 240775515-241355776 protein_coding
ENST00000366562 (RGS7-201) 240775514-241098764 protein_coding
ENST00000366563 (RGS7-003) 240775515-241356915 protein_coding
ENST00000366564 (RGS7-002) 240775515-241357085 protein_coding
ENST00000366565 (RGS7-001) 240775515-241357230 protein_coding
ENST00000401882 (RGS7-202) 240776163-241098762 protein_coding
ENST00000440928 (RGS7-005) 240775515-240868795 protein_coding
ENST00000446183 (RGS7-203) 240775514-241098764 protein_coding
ENSG00000215802 (RFKP1)
riboflavin kinase pseudogene 1 		ENST00000400940 (RFKP1-001) 240823006-240823433 transcribed_processed_pseudogene
ENSG00000223963 (PRKRIRP8)
protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) pseudogene 8 		ENST00000447914 (PRKRIRP8-001) 240769420-240771534 processed_pseudogene
ENSG00000224348 (RP11-306K13.1)
 ENST00000424448 (RP11-306K13.1-001) 241305580-241305882 processed_pseudogene
ENSG00000224359 (RP11-467I20.2)
 ENST00000457477 (RP11-467I20.2-001) 240530452-240530862 antisense
ENSG00000226014 (RP11-467I20.4)
 ENST00000425769 (RP11-467I20.4-001) 240549867-240550378 processed_pseudogene
ENSG00000226919 (RP11-80B9.1)
 ENST00000413801 (RP11-80B9.1-001) 240765557-240768680 antisense
ENSG00000228844 (RP11-467I20.3)
 ENST00000420757 (RP11-467I20.3-001) 240636599-240637052 processed_pseudogene
ENSG00000230015 (RP11-80B9.4)
 ENST00000431139 (RP11-80B9.4-001) 240739419-240739853 lincRNA
ENSG00000231440 (RP11-467I20.6)
 ENST00000428891 (RP11-467I20.6-001) 240588522-240590748 sense_intronic
ENSG00000233615 (HNRNPA1P42)
heterogeneous nuclear ribonucleoprotein A1 pseudogene 42 		ENST00000458678 (HNRNPA1P42-001) 240919653-240920609 processed_pseudogene
ENSG00000238085 (RP11-435F13.2)
 ENST00000437248 (RP11-435F13.2-001) 240998451-240998794 processed_pseudogene
CIL_0000L0_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000050069-ENSMUSG00000026527 CGP 10090 1:174833785-175491130
GeneTranscriptPositionBiotype
ENSMUSG00000026527 (Rgs7)
regulator of G protein signaling 7 		ENSMUST00000027812 (Rgs7-201) 175059736-175491130 protein_coding
ENSMUSG00000050069 (Grem2)
gremlin 2 homolog, cysteine knot superfamily (Xenopus laevis) 		ENSMUST00000055294 (Grem2-001) 174833785-174921819 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000L0_0001ENSDARG00000005001ENSDART00000024960ENSDARG00000096687ENSDART00000153431CIL_0000L0_0002ENSG00000180875ENST00000318160ENSG00000182901ENST00000348120ENST00000366562ENST00000366563ENST00000366564ENST00000366565ENST00000401882ENST00000440928ENST00000446183ENSG00000215802ENST00000400940ENSG00000223963ENST00000447914ENSG00000224348ENST00000424448ENSG00000224359ENST00000457477ENSG00000226014ENST00000425769ENSG00000226919ENST00000413801ENSG00000228844ENST00000420757ENSG00000230015ENST00000431139ENSG00000231440ENST00000428891ENSG00000233615ENST00000458678ENSG00000238085ENST00000437248CIL_0000L0_0003ENSMUSG00000026527ENSMUST00000027812ENSMUSG00000050069ENSMUST00000055294
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000L0_0001ENSDARG00000005001ENSDART00000024960ENSDARG00000096687ENSDART00000153431CIL_0000L0_0002ENSG00000180875ENST00000318160ENSG00000182901ENST00000348120ENST00000366563ENST00000366564ENST00000366565ENST00000401882ENST00000440928ENST00000446183ENSG00000215802ENST00000400940ENSG00000223963ENST00000447914ENSG00000224348ENST00000424448ENSG00000224359ENST00000457477ENSG00000226014ENST00000425769ENSG00000226919ENST00000413801ENSG00000228844ENST00000420757ENSG00000230015ENST00000431139ENSG00000231440ENST00000428891ENSG00000233615ENST00000458678ENSG00000238085ENST00000437248CIL_0000L0_0003ENSMUSG00000026527ENSMUST00000027812ENSMUSG00000050069ENSMUST00000055294
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000005001 ENSDART00000024960 N/A N/A N/A 0.969±0.00 N/A N/A 0.115±0.00 N/A N/A N/A 0.173±0.00 N/A N/A N/A
ENSDARG00000096687 ENSDART00000153431 N/A N/A N/A 9.729±0.00 N/A N/A 1.468±0.00 2.901±0.00 N/A N/A 0.508±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000180875 ENST00000318160 0.063±0.00 0.715±0.00 0.105±0.00 1.599±0.82 1.388±0.78 4.426±3.06 0.009±0.00 2.015±1.72 2.403±1.76 0.613±0.22 0.082±0.00 0.859±0.48 0.930±0.36 1.162±0.99
ENSG00000182901 ENST00000348120 N/A N/A 0.063±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000366562 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000366563 N/A N/A N/A N/A 0.127±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000366564 N/A N/A N/A 9.432±2.01 N/A 0.033±0.00 N/A 0.312±0.00 N/A N/A N/A 0.373±0.00 0.021±0.00 1.678±0.55
ENST00000366565 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.384±0.00
ENST00000401882 N/A N/A N/A 7.480±0.00 0.054±0.00 0.101±0.00 N/A N/A N/A 0.091±0.00 N/A 0.010±0.00 N/A N/A
ENST00000440928 N/A 0.007±0.00 N/A N/A N/A 0.172±0.00 N/A 0.654±0.00 0.012±0.00 0.012±0.00 0.055±0.00 0.034±0.00 0.041±0.00 12.000±0.00
ENST00000446183 N/A N/A N/A 7.860±2.94 N/A N/A N/A N/A 0.049±0.00 N/A N/A 0.015±0.00 0.075±0.00 1.482±0.00
ENSG00000215802 ENST00000400940 N/A N/A N/A 0.124±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000223963 ENST00000447914 N/A N/A N/A 0.089±0.02 0.009±0.00 N/A N/A N/A N/A 0.225±0.00 N/A 0.004±0.00 N/A 0.372±0.00
ENSG00000224348 ENST00000424448 N/A 0.087±0.00 N/A 0.201±0.00 N/A N/A 0.085±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000224359 ENST00000457477 N/A 0.055±0.00 N/A N/A N/A N/A N/A N/A 0.185±0.00 N/A N/A N/A N/A N/A
ENSG00000226014 ENST00000425769 N/A N/A N/A N/A 1.790±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.854±0.00
ENSG00000226919 ENST00000413801 N/A N/A N/A 0.015±0.00 N/A N/A N/A 0.044±0.00 N/A N/A N/A 0.089±0.00 N/A 0.537±0.14
ENSG00000228844 ENST00000420757 0.181±0.00 0.299±0.00 N/A N/A 0.161±0.00 0.147±0.00 N/A N/A 0.093±0.00 0.052±0.00 0.347±0.00 N/A N/A 0.180±0.00
ENSG00000230015 ENST00000431139 N/A N/A N/A 0.083±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.339±2.04
ENSG00000231440 ENST00000428891 0.056±0.00 0.018±0.00 N/A 0.077±0.00 N/A N/A N/A 0.018±0.00 0.030±0.00 N/A N/A N/A N/A N/A
ENSG00000233615 ENST00000458678 N/A 0.042±0.00 N/A 0.073±0.00 0.028±0.00 0.089±0.00 N/A 0.042±0.00 N/A N/A 0.049±0.00 N/A N/A 0.016±0.00
ENSG00000238085 ENST00000437248 0.062±0.00 0.396±0.00 N/A 0.149±0.00 0.141±0.00 0.318±0.00 N/A 0.206±0.00 0.120±0.00 0.527±0.00 0.970±0.00 N/A N/A 0.061±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026527 ENSMUST00000027812 0.277±0.00 0.407±0.00 0.235±0.00 16.138±18.44 N/A 0.153±0.06 N/A 0.194±0.04 0.026±0.03 0.143±0.04 0.024±0.01 1.236±0.73 0.068±0.04 0.157±0.19
ENSMUSG00000050069 ENSMUST00000055294 3.219±2.45 0.829±0.11 6.945±0.14 2.414±1.77 4.456±0.96 18.157±1.33 0.056±0.01 2.707±0.59 1.076±0.97 20.662±2.72 1.543±0.48 23.563±9.18 6.883±5.04 0.061±0.04

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