C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein A1 pseudogene 42
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000458678 HNRNPA1P42-001 ENSG00000233615 9606 + 1:240919653-240920609 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonKidneyMuscleTestisENST00000458678
Transcript ID Adrenal Brain Breast Colon Kidney Muscle Testis
ENST00000458678 0.042±0.00 0.073±0.00 0.028±0.00 0.089±0.00 0.042±0.00 0.049±0.00 0.016±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000L0 CIL_0000L0_0002 CGP 1:240489573-241357230
CIL_0000L5 CIL_0000L5_0002 CGP 1:240775514-241519761

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000168019 Gm10052-001 processed_pseudogene Mus_musculus 0 1153
ENSMUST00000087351 Hnrnpa1-202 protein_coding Mus_musculus 0 1153
ENSMUST00000117081 Gm5643-001 processed_pseudogene Mus_musculus 0 1118
ENSMUST00000181363 Gm8652-001 processed_pseudogene Mus_musculus 0 1086
ENSMUST00000129154 Hnrnpa1l2-ps-001 processed_pseudogene Mus_musculus 0 1085
ENSMUST00000050143 Gm7729-001 unprocessed_pseudogene Mus_musculus 0 907
ENSMUST00000036004 Hnrnpa1-201 protein_coding Mus_musculus 0 907
ENSMUST00000118970 Gm16216-001 processed_pseudogene Mus_musculus 0 881
ENSMUST00000119097 Gm13418-001 processed_pseudogene Mus_musculus 0 865
ENSMUST00000178732 RP24-383H12.1-001 processed_pseudogene Mus_musculus 0 691
ENSMUST00000119387 Gm12458-001 processed_pseudogene Mus_musculus 0 440
ENSMUST00000118156 Gm15240-001 processed_pseudogene Mus_musculus 1.96182e-44 183

Loading