C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000LF_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000104728-ENSG00000176595 CGP 9606 8:1823976-2006936
GeneTranscriptPositionBiotype
ENSG00000104728 (ARHGEF10)
Rho guanine nucleotide exchange factor (GEF) 10 		ENST00000349830 (ARHGEF10-003) 1823976-1958633 protein_coding
ENST00000382795 (ARHGEF10-008) 1858755-1869280 processed_transcript
ENST00000398560 (ARHGEF10-201) 1858755-1904096 protein_coding
ENST00000398564 (ARHGEF10-202) 1826111-1958633 protein_coding
ENST00000518288 (ARHGEF10-001) 1824015-1958641 protein_coding
ENST00000519641 (ARHGEF10-010) 1923196-1923874 retained_intron
ENST00000520359 (ARHGEF10-002) 1823988-1958641 protein_coding
ENST00000520972 (ARHGEF10-006) 1859894-1904110 retained_intron
ENST00000521927 (ARHGEF10-013) 1943654-1957205 processed_transcript
ENST00000522435 (ARHGEF10-004) 1882656-1958639 protein_coding
ENST00000522969 (ARHGEF10-007) 1859915-1871131 retained_intron
ENST00000523596 (ARHGEF10-012) 1943594-1952774 processed_transcript
ENST00000523711 (ARHGEF10-005) 1876051-1927513 retained_intron
ENST00000523980 (ARHGEF10-011) 1943595-1945919 retained_intron
ENST00000524212 (ARHGEF10-009) 1904235-1923490 processed_transcript
ENSG00000176595 (KBTBD11)
kelch repeat and BTB (POZ) domain containing 11 		ENST00000320248 (KBTBD11-001) 1973878-2006936 protein_coding
ENSG00000253696 (KBTBD11-OT1)
KBTBD11 overlapping transcript 1 		ENST00000518539 (KBTBD11-OT1-001) 1971397-1976478 lincRNA
ENSG00000253764 (RP11-439C15.4)
 ENST00000517676 (RP11-439C15.4-002) 1972570-1973610 lincRNA
ENST00000521498 (RP11-439C15.4-001) 1972821-1974637 lincRNA
ENSG00000270988 (RP11-439C15.5)
 ENST00000605539 (RP11-439C15.5-001) 1974818-1975314 lincRNA
CIL_0000LF_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000071176-ENSMUSG00000055675 CGP 10090 8:14911663-15033333
GeneTranscriptPositionBiotype
ENSMUSG00000055675 (Kbtbd11)
kelch repeat and BTB (POZ) domain containing 11 		ENSMUST00000069399 (Kbtbd11-001) 15011025-15033333 protein_coding
ENSMUST00000183471 (Kbtbd11-002) 15027290-15033333 nonsense_mediated_decay
ENSMUST00000184243 (Kbtbd11-003) 15032390-15032964 processed_transcript
ENSMUST00000184598 (Kbtbd11-004) 15011306-15027093 processed_transcript
ENSMUSG00000071176 (Arhgef10)
Rho guanine nucleotide exchange factor (GEF) 10 		ENSMUST00000084207 (Arhgef10-001) 14911663-15001085 protein_coding
ENSMUST00000110800 (Arhgef10-002) 14911738-15001085 protein_coding
ENSMUST00000160619 (Arhgef10-004) 14911717-14928291 retained_intron
ENSMUST00000161162 (Arhgef10-003) 14911724-14961202 protein_coding
ENSMUST00000162444 (Arhgef10-006) 14990359-14991124 processed_transcript
ENSMUST00000162636 (Arhgef10-005) 14996136-15001074 processed_transcript
ENSMUST00000163062 (Arhgef10-007) 14945301-15001082 protein_coding
ENSMUSG00000098322 (5830468F06Rik)
RIKEN cDNA 5830468F06 gene 		ENSMUST00000184288 (5830468F06Rik-001) 15015092-15018907 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000LF_0001ENSG00000104728ENST00000349830ENST00000382795ENST00000398560ENST00000398564ENST00000518288ENST00000519641ENST00000520359ENST00000520972ENST00000521927ENST00000522435ENST00000522969ENST00000523596ENST00000523711ENST00000523980ENST00000524212ENSG00000176595ENST00000320248ENSG00000253696ENST00000518539ENSG00000253764ENST00000517676ENST00000521498ENSG00000270988ENST00000605539CIL_0000LF_0002ENSMUSG00000055675ENSMUST00000069399ENSMUST00000183471ENSMUST00000184243ENSMUST00000184598ENSMUSG00000071176ENSMUST00000084207ENSMUST00000110800ENSMUST00000160619ENSMUST00000161162ENSMUST00000162444ENSMUST00000162636ENSMUST00000163062ENSMUSG00000098322ENSMUST00000184288
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000LF_0001ENSG00000104728ENST00000349830ENST00000398560ENST00000398564ENST00000519641ENST00000520359ENST00000520972ENST00000521927ENST00000522435ENST00000522969ENST00000523711ENSG00000176595ENST00000320248ENSG00000253696ENST00000518539ENSG00000253764ENST00000517676ENST00000521498ENSG00000270988ENST00000605539CIL_0000LF_0002ENSMUSG00000055675ENSMUST00000069399ENSMUST00000183471ENSMUSG00000071176ENSMUST00000084207ENSMUST00000110800ENSMUST00000161162ENSMUST00000162636ENSMUST00000163062ENSMUSG00000098322ENSMUST00000184288
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000104728 ENST00000349830 1.388±0.00 2.091±0.00 0.691±0.00 3.581±0.00 2.054±0.00 2.016±1.62 1.612±1.37 1.825±0.00 1.037±0.89 1.373±0.63 0.217±0.00 2.174±1.87 1.078±0.41 6.586±0.30
ENST00000382795 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000398560 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.321±0.00 N/A N/A N/A
ENST00000398564 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.923±0.00 N/A 0.919±0.09 0.854±0.00 9.097±0.00
ENST00000518288 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519641 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.732±0.00 N/A N/A N/A
ENST00000520359 2.505±0.00 N/A N/A N/A 1.160±0.01 N/A 1.408±0.85 N/A N/A 3.071±2.19 N/A 1.687±1.10 1.686±0.00 1.627±0.00
ENST00000520972 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.417±0.00 N/A 8.854±0.00
ENST00000521927 N/A N/A N/A N/A N/A 2.891±0.00 N/A N/A N/A N/A 1.602±0.00 N/A N/A N/A
ENST00000522435 1.767±0.00 4.196±0.00 N/A N/A 2.283±0.00 2.292±0.00 N/A 0.897±0.76 0.152±0.00 2.022±0.00 0.329±0.22 1.825±0.26 0.749±0.00 2.123±0.00
ENST00000522969 N/A N/A N/A 0.541±0.00 N/A N/A N/A N/A N/A N/A 0.332±0.00 N/A N/A N/A
ENST00000523596 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523711 N/A N/A 0.342±0.00 N/A N/A 0.326±0.00 N/A N/A N/A 1.109±0.00 N/A N/A N/A N/A
ENST00000523980 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524212 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000176595 ENST00000320248 5.598±0.00 5.202±0.00 3.135±0.00 24.836±10.14 1.080±0.03 2.772±0.00 1.156±0.64 7.494±3.86 1.984±0.90 1.183±0.00 0.354±0.33 0.962±0.46 0.314±0.16 2.570±0.99
ENSG00000253696 ENST00000518539 N/A 0.064±0.00 N/A 0.338±0.00 0.163±0.00 0.058±0.00 0.060±0.00 0.821±0.00 0.084±0.00 0.082±0.00 N/A 0.068±0.00 N/A 0.335±0.00
ENSG00000253764 ENST00000517676 0.136±0.00 0.229±0.00 N/A 0.986±0.90 N/A 0.171±0.00 0.180±0.00 0.476±0.00 0.129±0.00 0.128±0.00 N/A 0.118±0.00 N/A 0.145±0.02
ENST00000521498 0.088±0.00 0.301±0.00 N/A 1.147±1.01 0.729±0.41 0.959±0.00 N/A 1.038±0.00 N/A N/A N/A 0.199±0.07 0.277±0.00 0.542±0.00
ENSG00000270988 ENST00000605539 0.032±0.00 N/A N/A N/A N/A 0.120±0.00 0.245±0.00 0.032±0.00 N/A 0.140±0.00 N/A 0.057±0.00 N/A 0.360±0.12
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000055675 ENSMUST00000069399 1.446±0.37 N/A 6.884±2.72 7.862±2.77 4.449±0.07 2.440±1.20 0.330±0.09 2.539±0.30 0.082±0.05 2.096±0.78 0.227±0.24 1.068±0.41 0.610±0.38 0.644±0.29
ENSMUST00000183471 5.747±0.21 7.928±1.91 8.733±0.59 2.075±0.12 28.558±16.77 15.623±5.37 0.679±0.16 5.581±0.53 0.102±0.08 7.684±0.56 0.127±0.12 5.724±2.53 0.647±0.26 3.996±1.91
ENSMUST00000184243 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000184598 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000071176 ENSMUST00000084207 5.032±0.37 2.232±0.94 8.364±0.29 2.108±0.35 3.382±0.69 1.934±0.15 2.339±0.45 2.494±0.39 0.444±0.18 9.348±1.40 0.820±0.20 4.571±1.69 2.551±0.90 5.398±1.01
ENSMUST00000110800 8.271±2.37 2.974±0.98 4.606±0.17 3.248±1.56 6.124±1.86 2.931±0.97 2.465±0.86 1.038±0.32 0.515±0.20 6.986±1.25 0.476±0.25 5.932±2.26 4.931±2.17 2.626±1.15
ENSMUST00000160619 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161162 N/A N/A N/A 7.538±0.00 N/A N/A N/A N/A N/A N/A N/A 8.440±0.00 6.362±0.52 4.626±0.00
ENSMUST00000162444 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162636 N/A N/A 5.440±0.00 N/A N/A N/A 1.931±0.00 N/A 0.444±0.08 N/A 0.554±0.12 N/A N/A N/A
ENSMUST00000163062 N/A 3.268±1.70 N/A N/A 6.240±0.20 1.722±0.33 N/A N/A 0.269±0.09 4.098±0.40 N/A 4.195±1.75 N/A N/A
ENSMUSG00000098322 ENSMUST00000184288 0.074±0.02 0.056±0.00 0.087±0.00 0.080±0.04 0.578±0.31 0.199±0.10 0.025±0.00 0.074±0.04 0.061±0.06 0.097±0.04 N/A 0.086±0.03 0.046±0.03 0.041±0.02

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