C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000LF_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000104728-ENSG00000176595 CGP 9606 8:1823976-2006936
GeneTranscriptPositionBiotype
ENSG00000104728 (ARHGEF10)
Rho guanine nucleotide exchange factor (GEF) 10 		ENST00000349830 (ARHGEF10-003) 1823976-1958633 protein_coding
ENST00000382795 (ARHGEF10-008) 1858755-1869280 processed_transcript
ENST00000398560 (ARHGEF10-201) 1858755-1904096 protein_coding
ENST00000398564 (ARHGEF10-202) 1826111-1958633 protein_coding
ENST00000518288 (ARHGEF10-001) 1824015-1958641 protein_coding
ENST00000519641 (ARHGEF10-010) 1923196-1923874 retained_intron
ENST00000520359 (ARHGEF10-002) 1823988-1958641 protein_coding
ENST00000520972 (ARHGEF10-006) 1859894-1904110 retained_intron
ENST00000521927 (ARHGEF10-013) 1943654-1957205 processed_transcript
ENST00000522435 (ARHGEF10-004) 1882656-1958639 protein_coding
ENST00000522969 (ARHGEF10-007) 1859915-1871131 retained_intron
ENST00000523596 (ARHGEF10-012) 1943594-1952774 processed_transcript
ENST00000523711 (ARHGEF10-005) 1876051-1927513 retained_intron
ENST00000523980 (ARHGEF10-011) 1943595-1945919 retained_intron
ENST00000524212 (ARHGEF10-009) 1904235-1923490 processed_transcript
ENSG00000176595 (KBTBD11)
kelch repeat and BTB (POZ) domain containing 11 		ENST00000320248 (KBTBD11-001) 1973878-2006936 protein_coding
ENSG00000253696 (KBTBD11-OT1)
KBTBD11 overlapping transcript 1 		ENST00000518539 (KBTBD11-OT1-001) 1971397-1976478 lincRNA
ENSG00000253764 (RP11-439C15.4)
 ENST00000517676 (RP11-439C15.4-002) 1972570-1973610 lincRNA
ENST00000521498 (RP11-439C15.4-001) 1972821-1974637 lincRNA
ENSG00000270988 (RP11-439C15.5)
 ENST00000605539 (RP11-439C15.5-001) 1974818-1975314 lincRNA

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0000LF_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000071176-ENSMUSG00000055675 CGP 10090 8:14911663-15033333
GeneTranscriptPositionBiotype
ENSMUSG00000055675 (Kbtbd11)
kelch repeat and BTB (POZ) domain containing 11 		ENSMUST00000069399 (Kbtbd11-001) 15011025-15033333 protein_coding
ENSMUST00000183471 (Kbtbd11-002) 15027290-15033333 nonsense_mediated_decay
ENSMUST00000184243 (Kbtbd11-003) 15032390-15032964 processed_transcript
ENSMUST00000184598 (Kbtbd11-004) 15011306-15027093 processed_transcript
ENSMUSG00000071176 (Arhgef10)
Rho guanine nucleotide exchange factor (GEF) 10 		ENSMUST00000084207 (Arhgef10-001) 14911663-15001085 protein_coding
ENSMUST00000110800 (Arhgef10-002) 14911738-15001085 protein_coding
ENSMUST00000160619 (Arhgef10-004) 14911717-14928291 retained_intron
ENSMUST00000161162 (Arhgef10-003) 14911724-14961202 protein_coding
ENSMUST00000162444 (Arhgef10-006) 14990359-14991124 processed_transcript
ENSMUST00000162636 (Arhgef10-005) 14996136-15001074 processed_transcript
ENSMUST00000163062 (Arhgef10-007) 14945301-15001082 protein_coding
ENSMUSG00000098322 (5830468F06Rik)
RIKEN cDNA 5830468F06 gene 		ENSMUST00000184288 (5830468F06Rik-001) 15015092-15018907 antisense

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000LF_0001ENSG00000104728ENST00000349830ENST00000382795ENST00000398560ENST00000398564ENST00000518288ENST00000519641ENST00000520359ENST00000520972ENST00000521927ENST00000522435ENST00000522969ENST00000523596ENST00000523711ENST00000523980ENST00000524212ENSG00000176595ENST00000320248ENSG00000253696ENST00000518539ENSG00000253764ENST00000517676ENST00000521498ENSG00000270988ENST00000605539CIL_0000LF_0002ENSMUSG00000055675ENSMUST00000069399ENSMUST00000183471ENSMUST00000184243ENSMUST00000184598ENSMUSG00000071176ENSMUST00000084207ENSMUST00000110800ENSMUST00000160619ENSMUST00000161162ENSMUST00000162444ENSMUST00000162636ENSMUST00000163062ENSMUSG00000098322ENSMUST00000184288
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000LF_0001ENSG00000104728ENST00000349830ENST00000398560ENST00000398564ENST00000519641ENST00000520359ENST00000520972ENST00000521927ENST00000522435ENST00000522969ENST00000523711ENSG00000176595ENST00000320248ENSG00000253696ENST00000518539ENSG00000253764ENST00000517676ENST00000521498ENSG00000270988ENST00000605539CIL_0000LF_0002ENSMUSG00000055675ENSMUST00000069399ENSMUST00000183471ENSMUSG00000071176ENSMUST00000084207ENSMUST00000110800ENSMUST00000161162ENSMUST00000162636ENSMUST00000163062ENSMUSG00000098322ENSMUST00000184288
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000104728 ENST00000349830 1.388±0.00 2.091±0.00 0.691±0.00 3.581±0.00 2.054±0.00 2.016±1.62 1.612±1.37 1.825±0.00 1.037±0.89 1.373±0.63 0.217±0.00 2.174±1.87 1.078±0.41 6.586±0.30
ENST00000382795 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000398560 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.321±0.00 N/A N/A N/A
ENST00000398564 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.923±0.00 N/A 0.919±0.09 0.854±0.00 9.097±0.00
ENST00000518288 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519641 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.732±0.00 N/A N/A N/A
ENST00000520359 2.505±0.00 N/A N/A N/A 1.160±0.01 N/A 1.408±0.85 N/A N/A 3.071±2.19 N/A 1.687±1.10 1.686±0.00 1.627±0.00
ENST00000520972 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.417±0.00 N/A 8.854±0.00
ENST00000521927 N/A N/A N/A N/A N/A 2.891±0.00 N/A N/A N/A N/A 1.602±0.00 N/A N/A N/A
ENST00000522435 1.767±0.00 4.196±0.00 N/A N/A 2.283±0.00 2.292±0.00 N/A 0.897±0.76 0.152±0.00 2.022±0.00 0.329±0.22 1.825±0.26 0.749±0.00 2.123±0.00
ENST00000522969 N/A N/A N/A 0.541±0.00 N/A N/A N/A N/A N/A N/A 0.332±0.00 N/A N/A N/A
ENST00000523596 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523711 N/A N/A 0.342±0.00 N/A N/A 0.326±0.00 N/A N/A N/A 1.109±0.00 N/A N/A N/A N/A
ENST00000523980 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524212 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000176595 ENST00000320248 5.598±0.00 5.202±0.00 3.135±0.00 24.836±10.14 1.080±0.03 2.772±0.00 1.156±0.64 7.494±3.86 1.984±0.90 1.183±0.00 0.354±0.33 0.962±0.46 0.314±0.16 2.570±0.99
ENSG00000253696 ENST00000518539 N/A 0.064±0.00 N/A 0.338±0.00 0.163±0.00 0.058±0.00 0.060±0.00 0.821±0.00 0.084±0.00 0.082±0.00 N/A 0.068±0.00 N/A 0.335±0.00
ENSG00000253764 ENST00000517676 0.136±0.00 0.229±0.00 N/A 0.986±0.90 N/A 0.171±0.00 0.180±0.00 0.476±0.00 0.129±0.00 0.128±0.00 N/A 0.118±0.00 N/A 0.145±0.02
ENST00000521498 0.088±0.00 0.301±0.00 N/A 1.147±1.01 0.729±0.41 0.959±0.00 N/A 1.038±0.00 N/A N/A N/A 0.199±0.07 0.277±0.00 0.542±0.00
ENSG00000270988 ENST00000605539 0.032±0.00 N/A N/A N/A N/A 0.120±0.00 0.245±0.00 0.032±0.00 N/A 0.140±0.00 N/A 0.057±0.00 N/A 0.360±0.12
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000055675 ENSMUST00000069399 1.446±0.37 N/A 6.884±2.72 7.862±2.77 4.449±0.07 2.440±1.20 0.330±0.09 2.539±0.30 0.082±0.05 2.096±0.78 0.227±0.24 1.068±0.41 0.610±0.38 0.644±0.29
ENSMUST00000183471 5.747±0.21 7.928±1.91 8.733±0.59 2.075±0.12 28.558±16.77 15.623±5.37 0.679±0.16 5.581±0.53 0.102±0.08 7.684±0.56 0.127±0.12 5.724±2.53 0.647±0.26 3.996±1.91
ENSMUST00000184243 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000184598 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000071176 ENSMUST00000084207 5.032±0.37 2.232±0.94 8.364±0.29 2.108±0.35 3.382±0.69 1.934±0.15 2.339±0.45 2.494±0.39 0.444±0.18 9.348±1.40 0.820±0.20 4.571±1.69 2.551±0.90 5.398±1.01
ENSMUST00000110800 8.271±2.37 2.974±0.98 4.606±0.17 3.248±1.56 6.124±1.86 2.931±0.97 2.465±0.86 1.038±0.32 0.515±0.20 6.986±1.25 0.476±0.25 5.932±2.26 4.931±2.17 2.626±1.15
ENSMUST00000160619 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161162 N/A N/A N/A 7.538±0.00 N/A N/A N/A N/A N/A N/A N/A 8.440±0.00 6.362±0.52 4.626±0.00
ENSMUST00000162444 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162636 N/A N/A 5.440±0.00 N/A N/A N/A 1.931±0.00 N/A 0.444±0.08 N/A 0.554±0.12 N/A N/A N/A
ENSMUST00000163062 N/A 3.268±1.70 N/A N/A 6.240±0.20 1.722±0.33 N/A N/A 0.269±0.09 4.098±0.40 N/A 4.195±1.75 N/A N/A
ENSMUSG00000098322 ENSMUST00000184288 0.074±0.02 0.056±0.00 0.087±0.00 0.080±0.04 0.578±0.31 0.199±0.10 0.025±0.00 0.074±0.04 0.061±0.06 0.097±0.04 N/A 0.086±0.03 0.046±0.03 0.041±0.02

Loading