C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000LI_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000071091-ENSDARG00000003706 CGP 7955 17:19661829-19948292
GeneTranscriptPositionBiotype
ENSDARG00000003706 (ryr2b)
ryanodine receptor 2b (cardiac) 		ENSDART00000026272 (ryr2b-201) 19846874-19858637 protein_coding
ENSDART00000149737 (ryr2b-001) 19844156-19948292 protein_coding
ENSDARG00000071091 (chrm3a)
cholinergic receptor, muscarinic 3a 		ENSDART00000104893 (chrm3a-201) 19662946-19664733 protein_coding
ENSDART00000154251 (chrm3a-001) 19661829-19793871 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0000LI_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000046159-ENSMUSG00000021313 CGP 10090 13:9875486-12106945
GeneTranscriptPositionBiotype
ENSMUSG00000021313 (Ryr2)
ryanodine receptor 2, cardiac 		ENSMUST00000021750 (Ryr2-201) 11553103-12106945 protein_coding
ENSMUST00000170156 (Ryr2-202) 11553103-12106945 protein_coding
ENSMUSG00000046159 (Chrm3)
cholinergic receptor, muscarinic 3, cardiac 		ENSMUST00000063093 (Chrm3-201) 9877229-9878998 protein_coding
ENSMUST00000187510 (Chrm3-001) 9875486-10360844 protein_coding
ENSMUST00000190395 (Chrm3-002) 10215694-10360563 processed_transcript
ENSMUSG00000097009 (Gm26861)
predicted gene, 26861 		ENSMUST00000180807 (Gm26861-001) 10359479-10658893 antisense
ENSMUSG00000098110 (Gm26956)
predicted gene, 26956 		ENSMUST00000182176 (Gm26956-001) 11939558-11940543 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000LI_0001ENSDARG00000003706ENSDART00000026272ENSDART00000149737ENSDARG00000071091ENSDART00000104893ENSDART00000154251CIL_0000LI_0002ENSMUSG00000021313ENSMUST00000021750ENSMUST00000170156ENSMUSG00000046159ENSMUST00000063093ENSMUST00000187510ENSMUST00000190395ENSMUSG00000097009ENSMUST00000180807ENSMUSG00000098110ENSMUST00000182176
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000LI_0001ENSDARG00000003706ENSDART00000026272ENSDART00000149737ENSDARG00000071091ENSDART00000104893ENSDART00000154251CIL_0000LI_0002ENSMUSG00000021313ENSMUST00000021750ENSMUST00000170156ENSMUSG00000046159ENSMUST00000063093ENSMUST00000187510ENSMUST00000190395ENSMUSG00000097009ENSMUST00000180807ENSMUSG00000098110ENSMUST00000182176
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000003706 ENSDART00000026272 N/A N/A N/A 0.111±0.04 N/A N/A 41.297±0.00 N/A N/A N/A 0.185±0.00 N/A N/A N/A
ENSDART00000149737 N/A N/A N/A 0.028±0.01 N/A N/A 29.512±19.78 0.116±0.01 0.017±0.00 N/A 0.009±0.00 N/A N/A N/A
ENSDARG00000071091 ENSDART00000104893 N/A N/A N/A N/A N/A N/A 0.062±0.00 0.080±0.00 N/A N/A 0.122±0.00 N/A N/A N/A
ENSDART00000154251 N/A N/A N/A 1.508±1.13 N/A N/A 0.096±0.03 0.048±0.02 0.016±0.00 N/A 0.147±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021313 ENSMUST00000021750 0.080±0.04 0.117±0.01 0.175±0.03 1.057±0.55 0.027±0.01 0.273±0.09 45.037±15.00 0.022±0.01 0.013±0.01 0.809±0.41 0.007±0.00 0.562±0.33 0.083±0.02 0.047±0.01
ENSMUST00000170156 0.017±0.00 0.117±0.01 N/A 7.304±0.00 0.027±0.01 0.213±0.03 N/A 0.022±0.01 0.008±0.01 0.293±0.00 0.007±0.00 0.498±0.27 0.059±0.03 0.046±0.01
ENSMUSG00000046159 ENSMUST00000063093 0.359±0.27 0.543±0.03 N/A 3.388±2.26 0.307±0.20 0.869±0.00 0.174±0.05 0.773±0.20 0.036±0.02 0.431±0.22 0.023±0.01 0.273±0.12 0.062±0.02 0.166±0.11
ENSMUST00000187510 0.481±0.30 0.938±0.38 9.844±1.06 2.336±1.73 0.240±0.17 1.146±0.42 0.185±0.08 1.168±0.10 0.016±0.01 0.974±0.28 0.052±0.03 0.461±0.22 0.076±0.05 0.069±0.04
ENSMUST00000190395 1.807±0.00 1.416±0.01 N/A N/A N/A 1.296±0.24 N/A 1.699±0.00 0.067±0.00 N/A N/A 1.375±0.70 0.155±0.00 0.303±0.16
ENSMUSG00000097009 ENSMUST00000180807 0.014±0.01 0.039±0.02 0.028±0.00 0.007±0.00 0.026±0.02 0.049±0.02 0.013±0.00 0.009±0.00 0.023±0.02 0.018±0.00 0.009±0.00 0.047±0.02 0.009±0.01 0.043±0.01
ENSMUSG00000098110 ENSMUST00000182176 0.033±0.00 0.093±0.01 0.026±0.01 0.050±0.00 0.199±0.00 0.071±0.00 0.867±0.36 N/A 0.019±0.00 0.039±0.00 0.064±0.00 0.230±0.14 0.058±0.00 N/A

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