C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000161_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000015686-ENSDARG00000009342 CGP 7955 24:7974762-8070970
GeneTranscriptPositionBiotype
ENSDARG00000009342 (txndc5)
thioredoxin domain containing 5 		ENSDART00000145815 (txndc5-001) 8054762-8070970 protein_coding
ENSDARG00000015686 (bmp6)
bone morphogenetic protein 6 		ENSDART00000019705 (bmp6-001) 7974762-8049198 protein_coding
ENSDART00000139467 (bmp6-002) 7998269-8023823 protein_coding
CIL_000161_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000153162-ENSG00000259040 CGP 9606 6:7726797-8064364
GeneTranscriptPositionBiotype
ENSG00000153162 (BMP6)
bone morphogenetic protein 6 		ENST00000283147 (BMP6-001) 7726797-7881422 protein_coding
ENSG00000217746 (RP1-303A1.1)
 ENST00000405326 (RP1-303A1.1-001) 7938430-7939322 processed_pseudogene
ENSG00000219294 (PIP5K1P1)
phosphatidylinositol-4-phosphate 5-kinase, type I, pseudogene 1 		ENST00000460661 (PIP5K1P1-001) 7986537-7988192 processed_pseudogene
ENSG00000239264 (TXNDC5)
thioredoxin domain containing 5 (endoplasmic reticulum) 		ENST00000379757 (TXNDC5-001) 7881517-7910814 protein_coding
ENST00000460138 (TXNDC5-002) 7881517-7889445 retained_intron
ENST00000469459 (TXNDC5-004) 7895155-7900242 retained_intron
ENST00000473453 (TXNDC5-003) 7883144-7910077 protein_coding
ENST00000475802 (TXNDC5-005) 7883155-7888961 retained_intron
ENSG00000259040 (BLOC1S5-TXNDC5)
BLOC1S5-TXNDC5 readthrough (NMD candidate) 		ENST00000439343 (BLOC1S5-TXNDC5-001) 7881522-8064364 nonsense_mediated_decay
ENST00000539054 (BLOC1S5-TXNDC5-201) 7881250-8026413 protein_coding
CIL_000161_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000039004-ENSMUSG00000038991 CGP 10090 13:38345716-38528824
GeneTranscriptPositionBiotype
ENSMUSG00000038991 (Txndc5)
thioredoxin domain containing 5 		ENSMUST00000035988 (Txndc5-001) 38500273-38528490 protein_coding
ENSMUST00000160046 (Txndc5-004) 38500277-38505942 retained_intron
ENSMUST00000160653 (Txndc5-003) 38500273-38527914 protein_coding
ENSMUST00000162075 (Txndc5-002) 38500273-38528824 protein_coding
ENSMUSG00000039004 (Bmp6)
bone morphogenetic protein 6 		ENSMUST00000171970 (Bmp6-201) 38345716-38499728 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000161_0001ENSDARG00000009342ENSDART00000145815ENSDARG00000015686ENSDART00000019705ENSDART00000139467CIL_000161_0002ENSG00000153162ENST00000283147ENSG00000217746ENST00000405326ENSG00000219294ENST00000460661ENSG00000239264ENST00000379757ENST00000460138ENST00000469459ENST00000473453ENST00000475802ENSG00000259040ENST00000439343ENST00000539054CIL_000161_0003ENSMUSG00000038991ENSMUST00000035988ENSMUST00000160046ENSMUST00000160653ENSMUST00000162075ENSMUSG00000039004ENSMUST00000171970
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000161_0001ENSDARG00000009342ENSDART00000145815ENSDARG00000015686ENSDART00000019705ENSDART00000139467CIL_000161_0002ENSG00000153162ENST00000283147ENSG00000217746ENST00000405326ENSG00000219294ENST00000460661ENSG00000239264ENST00000379757ENST00000473453ENSG00000259040ENST00000439343ENST00000539054CIL_000161_0003ENSMUSG00000038991ENSMUST00000035988ENSMUST00000160653ENSMUSG00000039004ENSMUST00000171970
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000009342 ENSDART00000145815 N/A N/A N/A 6.856±1.08 N/A N/A 12.491±2.75 25.147±5.92 0.976±0.00 N/A 2.801±0.00 N/A N/A N/A
ENSDARG00000015686 ENSDART00000019705 N/A N/A N/A 0.136±0.04 N/A N/A 1.329±0.15 1.002±0.05 0.520±0.00 N/A 0.117±0.00 N/A N/A N/A
ENSDART00000139467 N/A N/A N/A 0.758±0.00 N/A N/A N/A N/A N/A N/A 0.225±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000153162 ENST00000283147 29.873±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 17.103±0.00 N/A N/A 27.749±3.40 N/A
ENSG00000217746 ENST00000405326 N/A 0.029±0.00 N/A 0.030±0.00 0.015±0.00 N/A 0.013±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000219294 ENST00000460661 N/A 0.049±0.00 0.466±0.00 0.056±0.00 N/A N/A N/A N/A N/A 0.211±0.00 N/A 0.046±0.02 N/A 1.833±0.00
ENSG00000239264 ENST00000379757 45.619±0.00 174.138±0.00 5.603±0.00 12.222±0.00 60.889±10.43 45.169±0.03 12.500±7.60 40.277±19.56 52.243±39.73 42.713±22.36 4.033±1.07 74.273±33.53 100.669±8.45 26.702±15.65
ENST00000460138 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469459 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473453 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 58.687±0.00 71.186±0.00 15.040±0.00
ENST00000475802 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000259040 ENST00000439343 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.734±0.00 N/A N/A N/A
ENST00000539054 16.834±0.00 N/A 3.465±0.00 5.057±0.00 9.499±0.00 N/A N/A 4.511±0.00 3.238±0.00 8.078±0.00 0.835±0.00 14.697±3.82 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000038991 ENSMUST00000035988 72.549±37.87 219.865±13.62 62.881±4.96 17.629±3.44 82.656±41.27 222.259±18.38 18.365±2.68 47.815±11.74 49.691±10.73 93.957±15.18 10.280±1.23 159.941±56.39 78.598±19.61 8.118±2.12
ENSMUST00000160046 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000160653 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 36.633±15.46 N/A N/A
ENSMUST00000162075 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000039004 ENSMUST00000171970 10.124±3.17 5.599±0.65 11.074±0.32 5.375±0.00 6.722±0.42 8.897±0.42 10.742±3.18 27.272±8.91 0.812±0.42 76.053±18.27 3.522±0.14 10.982±3.54 2.037±1.63 1.106±0.54

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