C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001CW_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000028118-ENSDARG00000044781 CGP 7955 15:6032677-6373322
GeneTranscriptPositionBiotype
ENSDARG00000028118 (dscamb)
Down syndrome cell adhesion molecule b 		ENSDART00000098038 (dscamb-201) 6033952-6302800 protein_coding
ENSDART00000148350 (dscamb-001) 6032677-6142029 protein_coding
ENSDARG00000044781 (bace2)
beta-site APP-cleaving enzyme 2 		ENSDART00000065824 (bace2-201) 6348899-6373322 protein_coding
ENSDART00000157250 (bace2-001) 6348710-6370847 protein_coding
CIL_0001CW_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000171587-ENSG00000182240 CGP 9606 21:40010999-41282518
GeneTranscriptPositionBiotype
ENSG00000171587 (DSCAM)
Down syndrome cell adhesion molecule 		ENST00000400454 (DSCAM-001) 40010999-40847139 protein_coding
ENST00000404019 (DSCAM-002) 40012901-40353654 protein_coding
ENST00000617870 (DSCAM-201) 40012414-40369270 protein_coding
ENSG00000182240 (BACE2)
beta-site APP-cleaving enzyme 2 		ENST00000328735 (BACE2-003) 41167801-41276597 protein_coding
ENST00000330333 (BACE2-001) 41167801-41276597 protein_coding
ENST00000347667 (BACE2-002) 41167801-41282518 protein_coding
ENST00000463674 (BACE2-008) 41241745-41275624 processed_transcript
ENST00000465326 (BACE2-006) 41236628-41257326 processed_transcript
ENST00000466122 (BACE2-004) 41230118-41276597 processed_transcript
ENST00000470864 (BACE2-005) 41225476-41241839 processed_transcript
ENST00000475618 (BACE2-010) 41252465-41257326 processed_transcript
ENST00000487994 (BACE2-007) 41226266-41275381 processed_transcript
ENST00000491838 (BACE2-009) 41226303-41246271 retained_intron
ENSG00000224388 (BACE2-IT1)
BACE2 intronic transcript 1 (non-protein coding) 		ENST00000433378 (BACE2-IT1-001) 41180097-41180626 antisense
ENSG00000226496 (LINC00323)
long intergenic non-protein coding RNA 323 		ENST00000435493 (LINC00323-002) 41143142-41147423 antisense
ENST00000441268 (LINC00323-001) 41141493-41148133 antisense
ENST00000446910 (LINC00323-003) 41143180-41147433 antisense
ENSG00000233756 (DSCAM-IT1)
DSCAM intronic transcript 1 (non-protein coding) 		ENST00000440363 (DSCAM-IT1-001) 40618507-40630767 sense_intronic
ENST00000441910 (DSCAM-IT1-002) 40615378-40630767 sense_intronic
ENSG00000235123 (DSCAM-AS1)
DSCAM antisense RNA 1 		ENST00000422749 (DSCAM-AS1-002) 40383083-40385358 antisense
ENST00000427451 (DSCAM-AS1-001) 40383083-40385358 antisense
ENST00000444046 (DSCAM-AS1-003) 40383083-40385358 antisense
ENST00000455354 (DSCAM-AS1-004) 40383083-40385358 antisense
ENSG00000280109 (PLAC4)
 ENST00000623119 (PLAC4-001) 41175231-41180818 TEC
ENST00000624999 (PLAC4-201) 41175231-41185239 TEC
CIL_0001CW_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000050272-ENSMUSG00000040605 CGP 10090 16:96592079-97439012
GeneTranscriptPositionBiotype
ENSMUSG00000040605 (Bace2)
beta-site APP-cleaving enzyme 2 		ENSMUST00000047275 (Bace2-201) 97356728-97439012 protein_coding
ENSMUSG00000050272 (Dscam)
Down syndrome cell adhesion molecule 		ENSMUST00000056102 (Dscam-001) 96592079-97170752 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001CW_0001ENSDARG00000028118ENSDART00000098038ENSDART00000148350ENSDARG00000044781ENSDART00000065824ENSDART00000157250CIL_0001CW_0002ENSG00000171587ENST00000400454ENST00000404019ENST00000617870ENSG00000182240ENST00000328735ENST00000330333ENST00000347667ENST00000463674ENST00000465326ENST00000466122ENST00000470864ENST00000475618ENST00000487994ENST00000491838ENSG00000224388ENST00000433378ENSG00000226496ENST00000435493ENST00000441268ENST00000446910ENSG00000233756ENST00000440363ENST00000441910ENSG00000235123ENST00000422749ENST00000427451ENST00000444046ENST00000455354ENSG00000280109ENST00000623119ENST00000624999CIL_0001CW_0003ENSMUSG00000040605ENSMUST00000047275ENSMUSG00000050272ENSMUST00000056102
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001CW_0001ENSDARG00000028118ENSDART00000098038ENSDART00000148350ENSDARG00000044781ENSDART00000065824ENSDART00000157250CIL_0001CW_0002ENSG00000171587ENST00000400454ENST00000404019ENST00000617870ENSG00000182240ENST00000328735ENST00000330333ENST00000347667ENST00000463674ENST00000466122ENST00000487994ENST00000491838ENSG00000224388ENST00000433378ENSG00000226496ENST00000435493ENST00000441268ENST00000446910ENSG00000233756ENST00000440363ENST00000441910ENSG00000235123ENST00000422749ENST00000427451ENST00000444046ENST00000455354ENSG00000280109ENST00000623119ENST00000624999CIL_0001CW_0003ENSMUSG00000040605ENSMUST00000047275ENSMUSG00000050272ENSMUST00000056102
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000028118 ENSDART00000098038 N/A N/A N/A 3.042±0.61 N/A N/A 0.205±0.00 0.207±0.13 N/A N/A N/A N/A N/A N/A
ENSDART00000148350 N/A N/A N/A N/A N/A N/A 0.013±0.01 0.036±0.00 0.044±0.00 N/A N/A N/A N/A N/A
ENSDARG00000044781 ENSDART00000065824 N/A N/A N/A 0.484±0.16 N/A N/A 2.822±0.83 5.091±0.00 0.473±0.00 N/A 0.732±0.00 N/A N/A N/A
ENSDART00000157250 N/A N/A N/A 0.607±0.00 N/A N/A 1.294±0.00 3.948±0.00 0.470±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000171587 ENST00000400454 N/A N/A N/A 0.814±0.00 N/A 0.049±0.00 N/A N/A 0.012±0.01 N/A N/A N/A 0.123±0.05 0.056±0.00
ENST00000404019 N/A N/A N/A 0.937±0.00 N/A N/A N/A 0.208±0.00 N/A 0.034±0.01 N/A 0.016±0.01 0.093±0.00 0.078±0.04
ENST00000617870 0.003±0.00 0.003±0.00 N/A 1.070±0.00 N/A 0.021±0.00 N/A N/A 0.004±0.00 N/A N/A 0.025±0.00 0.093±0.03 0.109±0.00
ENSG00000182240 ENST00000328735 N/A N/A N/A N/A N/A 6.385±0.00 0.692±0.00 0.172±0.00 1.146±0.00 N/A 0.312±0.00 9.861±1.76 11.132±0.00 N/A
ENST00000330333 9.693±0.00 20.260±0.00 4.570±0.00 1.494±0.00 7.312±0.87 10.710±0.00 3.219±0.00 9.765±0.00 1.034±0.00 6.626±4.68 1.702±0.00 6.203±0.54 11.967±2.80 5.531±0.00
ENST00000347667 N/A N/A 0.427±0.00 N/A N/A N/A 0.263±0.00 N/A N/A 0.915±0.00 0.043±0.00 1.418±0.42 N/A 0.263±0.00
ENST00000463674 N/A N/A N/A 1.317±0.00 N/A 13.994±0.00 N/A N/A N/A 11.238±0.00 N/A 41.347±0.00 25.511±15.18 5.190±0.00
ENST00000465326 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466122 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.434±0.00 N/A
ENST00000470864 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475618 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487994 N/A N/A N/A N/A N/A N/A N/A N/A 2.459±0.00 N/A 1.563±0.00 N/A N/A 1.156±0.00
ENST00000491838 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.771±0.00 N/A N/A N/A
ENSG00000224388 ENST00000433378 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.119±0.00
ENSG00000226496 ENST00000435493 N/A 0.439±0.00 N/A 0.566±0.00 N/A N/A 0.083±0.00 0.490±0.00 N/A N/A N/A N/A 0.219±0.00 N/A
ENST00000441268 0.118±0.00 0.009±0.00 N/A 0.227±0.19 0.130±0.03 0.043±0.00 0.015±0.00 0.292±0.00 N/A 0.016±0.00 N/A 0.103±0.06 0.027±0.00 0.091±0.06
ENST00000446910 N/A 0.054±0.00 N/A N/A N/A 0.241±0.00 N/A N/A N/A N/A N/A 0.293±0.00 N/A 0.255±0.00
ENSG00000233756 ENST00000440363 N/A N/A N/A 0.206±0.11 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.054±0.00
ENST00000441910 N/A N/A N/A 0.195±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000235123 ENST00000422749 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.100±0.00 N/A
ENST00000427451 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.044±0.00 N/A
ENST00000444046 0.040±0.00 0.161±0.00 N/A 0.029±0.00 0.035±0.00 0.025±0.00 0.053±0.00 0.018±0.00 N/A 0.007±0.00 0.017±0.00 N/A 0.041±0.00 0.026±0.00
ENST00000455354 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.197±0.00 N/A
ENSG00000280109 ENST00000623119 0.041±0.00 0.530±0.00 N/A 0.076±0.00 0.069±0.00 0.041±0.00 0.045±0.00 N/A N/A 0.057±0.00 0.087±0.07 0.287±0.27 N/A 0.047±0.03
ENST00000624999 0.100±0.00 0.153±0.00 1.742±0.00 0.042±0.03 1.886±1.84 0.536±0.45 0.145±0.07 0.104±0.02 0.474±0.47 0.468±0.39 0.356±0.00 0.581±0.77 15.063±10.77 0.007±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000040605 ENSMUST00000047275 4.427±1.82 5.755±2.08 15.755±2.39 0.279±0.06 3.387±0.93 27.823±5.79 2.348±0.17 1.299±0.13 1.091±0.50 5.477±0.78 0.296±0.09 17.289±6.92 0.599±0.22 0.243±0.11
ENSMUSG00000050272 ENSMUST00000056102 0.038±0.04 0.009±0.00 0.004±0.00 7.560±4.03 0.224±0.12 0.052±0.03 0.006±0.00 0.020±0.01 0.004±0.00 0.007±0.00 0.014±0.01 0.109±0.05 0.040±0.02 0.272±0.11

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