C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001CY_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000036974-ENSDARG00000038805 CGP 7955 10:162944-173059
GeneTranscriptPositionBiotype
ENSDARG00000036974 (ripply3)
ripply3 		ENSDART00000053702 (ripply3-201) 162944-166288 protein_coding
ENSDARG00000038805 (pigp)
phosphatidylinositol glycan, class P 		ENSDART00000056672 (pigp-201) 168561-173059 protein_coding
ENSDART00000135572 (pigp-001) 172660-172920 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0001CY_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000183145-ENSG00000185808 CGP 9606 21:37006150-37073170
GeneTranscriptPositionBiotype
ENSG00000183145 (RIPPLY3)
ripply transcriptional repressor 3 		ENST00000329553 (RIPPLY3-001) 37006563-37019659 protein_coding
ENST00000485272 (RIPPLY3-003) 37006150-37019659 processed_transcript
ENST00000490393 (RIPPLY3-002) 37006202-37019659 processed_transcript
ENSG00000185808 (PIGP)
phosphatidylinositol glycan anchor biosynthesis, class P 		ENST00000329667 (PIGP-008) 37065374-37072537 processed_transcript
ENST00000360525 (PIGP-001) 37059170-37073158 protein_coding
ENST00000399098 (PIGP-003) 37065374-37073170 protein_coding
ENST00000399102 (PIGP-002) 37065374-37072900 protein_coding
ENST00000399103 (PIGP-005) 37065374-37073011 protein_coding
ENST00000430792 (PIGP-007) 37069552-37072997 protein_coding
ENST00000464265 (PIGP-004) 37062846-37072811 protein_coding
ENST00000479152 (PIGP-006) 37069267-37072723 retained_intron

Homo sapiens Ensembl (GRCh38)

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CIL_0001CY_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000022941-ENSMUSG00000022940 CGP 10090 16:94328420-94371015
GeneTranscriptPositionBiotype
ENSMUSG00000022941 (Ripply3)
ripply3 homolog (zebrafish) 		ENSMUST00000023660 (Ripply3-001) 94328420-94336935 protein_coding
ENSMUSG00000040785 (Ttc3)
tetratricopeptide repeat domain 3 		ENSMUST00000117648 (Ttc3-001) 94370618-94469222 protein_coding
ENSMUST00000119131 (Ttc3-011) 94370798-94396626 protein_coding
ENSMUST00000122895 (Ttc3-007) 94370781-94442679 protein_coding
ENSMUST00000127667 (Ttc3-020) 94370797-94410840 protein_coding
ENSMUST00000127911 (Ttc3-018) 94370767-94409710 processed_transcript
ENSMUST00000129536 (Ttc3-028) 94466522-94468217 retained_intron
ENSMUST00000130960 (Ttc3-014) 94370751-94416360 processed_transcript
ENSMUST00000131429 (Ttc3-027) 94465161-94468885 retained_intron
ENSMUST00000139513 (Ttc3-015) 94370751-94418621 nonsense_mediated_decay
ENSMUST00000139607 (Ttc3-026) 94440093-94448745 retained_intron
ENSMUST00000141176 (Ttc3-025) 94425148-94433154 protein_coding
ENSMUST00000141192 (Ttc3-030) 94451126-94460077 nonsense_mediated_decay
ENSMUST00000141856 (Ttc3-012) 94370751-94422296 protein_coding
ENSMUST00000143145 (Ttc3-004) 94370757-94442679 nonsense_mediated_decay
ENSMUST00000145432 (Ttc3-010) 94370750-94396382 nonsense_mediated_decay
ENSMUST00000145883 (Ttc3-023) 94370823-94420280 protein_coding
ENSMUST00000147046 (Ttc3-009) 94370796-94427865 protein_coding
ENSMUST00000147352 (Ttc3-002) 94370739-94442667 protein_coding
ENSMUST00000149753 (Ttc3-024) 94370743-94403807 retained_intron
ENSMUST00000149885 (Ttc3-021) 94370797-94403343 protein_coding
ENSMUST00000150097 (Ttc3-019) 94370780-94415958 protein_coding
ENSMUST00000150346 (Ttc3-006) 94370743-94434345 protein_coding
ENSMUST00000151192 (Ttc3-022) 94370798-94412109 processed_transcript
ENSMUST00000151770 (Ttc3-008) 94370781-94442679 protein_coding
ENSMUST00000152117 (Ttc3-005) 94370767-94442669 protein_coding
ENSMUST00000153062 (Ttc3-016) 94370767-94390263 nonsense_mediated_decay
ENSMUST00000153988 (Ttc3-013) 94370749-94418693 protein_coding
ENSMUST00000154196 (Ttc3-029) 94457397-94467994 retained_intron
ENSMUST00000154243 (Ttc3-017) 94370767-94387369 nonsense_mediated_decay
ENSMUST00000155692 (Ttc3-003) 94370746-94442672 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001CY_0001ENSDARG00000036974ENSDART00000053702ENSDARG00000038805ENSDART00000056672ENSDART00000135572CIL_0001CY_0002ENSG00000183145ENST00000329553ENST00000485272ENST00000490393ENSG00000185808ENST00000329667ENST00000360525ENST00000399098ENST00000399102ENST00000399103ENST00000430792ENST00000464265ENST00000479152CIL_0001CY_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001CY_0001ENSDARG00000036974ENSDART00000053702ENSDARG00000038805ENSDART00000056672CIL_0001CY_0002ENSG00000183145ENST00000329553ENST00000485272ENST00000490393ENSG00000185808ENST00000329667ENST00000360525ENST00000399098ENST00000399102ENST00000399103ENST00000464265CIL_0001CY_0003ENSMUSG00000022941ENSMUST00000023660ENSMUSG00000040785ENSMUST00000117648ENSMUST00000130960ENSMUST00000139513ENSMUST00000141176ENSMUST00000141192ENSMUST00000154196ENSMUST00000154243
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000036974 ENSDART00000053702 N/A N/A N/A 4.107±3.33 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000038805 ENSDART00000056672 N/A N/A N/A N/A N/A N/A N/A N/A 0.343±0.00 N/A 4.869±0.00 N/A N/A N/A
ENSDART00000135572 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000183145 ENST00000329553 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.830±0.29 0.359±0.00 N/A
ENST00000485272 N/A N/A N/A N/A 0.074±0.00 N/A N/A 0.176±0.00 N/A N/A N/A N/A N/A 0.284±0.00
ENST00000490393 0.078±0.00 0.255±0.00 N/A 0.199±0.00 0.245±0.00 0.062±0.00 0.396±0.00 0.157±0.00 0.125±0.00 0.308±0.00 0.953±0.00 0.079±0.06 0.141±0.09 0.089±0.00
ENSG00000185808 ENST00000329667 N/A N/A N/A N/A N/A 2.562±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000360525 N/A 0.417±0.00 0.090±0.00 0.473±0.19 0.150±0.00 0.267±0.13 0.155±0.12 0.327±0.10 0.217±0.00 0.219±0.00 0.098±0.00 0.209±0.09 0.067±0.00 0.387±0.00
ENST00000399098 2.944±0.00 2.539±0.00 N/A N/A N/A 5.138±0.00 4.202±0.00 1.391±0.52 3.406±0.00 1.910±0.96 3.624±2.55 2.223±1.11 3.018±1.50 5.943±0.00
ENST00000399102 N/A N/A N/A N/A N/A N/A 3.006±0.00 N/A N/A N/A N/A N/A 4.317±0.29 N/A
ENST00000399103 6.924±0.00 2.930±0.00 N/A 3.855±1.37 3.542±0.00 8.645±0.00 4.220±2.18 3.857±1.06 3.679±1.62 2.591±0.52 5.866±4.54 7.654±4.63 6.681±3.06 12.420±0.00
ENST00000430792 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464265 N/A N/A 0.795±0.00 0.425±0.00 0.349±0.00 0.527±0.01 0.160±0.00 0.280±0.00 0.322±0.00 0.093±0.00 0.920±0.00 0.310±0.15 0.175±0.00 0.484±0.00
ENST00000479152 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022941 ENSMUST00000023660 2.005±0.48 3.068±0.82 1.029±0.00 0.370±0.13 1.325±0.21 0.895±0.32 1.814±0.42 2.712±0.24 0.897±0.22 26.308±4.98 0.608±0.14 0.954±0.43 1.585±0.38 0.060±0.02
ENSMUSG00000040785 ENSMUST00000117648 14.689±5.91 13.985±4.57 12.970±1.89 81.692±0.00 12.313±5.17 2.664±0.60 10.450±0.47 6.588±3.63 3.154±2.31 12.028±0.25 7.651±0.76 15.428±7.98 7.978±2.50 2.802±1.35
ENSMUST00000119131 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000122895 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000127667 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000127911 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129536 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130960 N/A 42.691±2.37 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131429 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139513 N/A 53.586±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139607 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141176 N/A N/A N/A 378.265±0.00 N/A N/A N/A N/A N/A N/A N/A 87.940±0.00 35.046±0.00 16.324±0.00
ENSMUST00000141192 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 60.996±0.00 N/A N/A
ENSMUST00000141856 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143145 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145432 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145883 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147046 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147352 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149753 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149885 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150097 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150346 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151192 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151770 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152117 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153062 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153988 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154196 N/A N/A N/A 284.582±0.00 N/A N/A N/A N/A N/A N/A N/A 56.197±0.00 26.809±1.31 9.159±0.00
ENSMUST00000154243 N/A 37.262±7.76 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155692 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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