C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000488371 RP11-864J10.2-001 ENSG00000240441 9606 + 12:107719599-107720133 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastHeartLiverOvaryENST00000488371
Transcript ID Adrenal Bladder Brain Breast Heart Liver Ovary
ENST00000488371 0.076±0.00 0.820±0.00 0.334±0.00 0.092±0.00 0.100±0.01 0.225±0.00 0.213±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001MB CIL_0001MB_0001 CGP 12:107685732-107761272

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000119383 Rpl17-ps10-001 processed_pseudogene Mus_musculus 0 472
ENSMUST00000121001 Rpl17-ps5-001 processed_pseudogene Mus_musculus 0 472
ENSMUST00000085340 Gm10268-201 processed_pseudogene Mus_musculus 0 472
ENSMUST00000118924 Rpl17-ps8-001 processed_pseudogene Mus_musculus 0 466
ENSMUST00000079716 Rpl17-201 protein_coding Mus_musculus 0 466
ENSMUST00000120241 Rpl17-ps4-001 processed_pseudogene Mus_musculus 0 460
ENSMUST00000119541 Rpl17-ps9-001 processed_pseudogene Mus_musculus 0 455
ENSMUST00000173076 Gm3617-001 processed_pseudogene Mus_musculus 0 444
ENSMUST00000117614 Gm11531-001 processed_pseudogene Mus_musculus 0 438
ENSMUST00000164501 Gm17214-001 processed_pseudogene Mus_musculus 0 435
ENSMUST00000121305 Gm11472-001 processed_pseudogene Mus_musculus 0 424
ENSMUST00000185778 RP24-178O17.1-001 processed_pseudogene Mus_musculus 0 407
ENSMUST00000162765 Gm9719-001 processed_pseudogene Mus_musculus 0 403
ENSMUST00000119731 Gm4986-001 processed_pseudogene Mus_musculus 0 394
ENSMUST00000139696 Gm8062-001 processed_pseudogene Mus_musculus 0 388
ENSMUST00000120579 Gm11343-001 processed_pseudogene Mus_musculus 0 383
ENSMUST00000189856 RP23-110B5.4-001 processed_pseudogene Mus_musculus 0 375
ENSMUST00000164064 Gm6133-201 protein_coding Mus_musculus 0 368
ENSMUST00000117390 Gm15661-001 processed_pseudogene Mus_musculus 0 359
ENSMUST00000119012 Gm12380-001 processed_pseudogene Mus_musculus 0 353
ENSMUST00000145241 Gm16259-001 processed_pseudogene Mus_musculus 0 353
ENSMUST00000155351 Ndfip2-002 retained_intron Mus_musculus 0 353
ENSMUST00000119137 Gm15497-001 processed_pseudogene Mus_musculus 0 350
ENSMUST00000121960 Gm14441-001 processed_pseudogene Mus_musculus 0 320
ENSMUST00000127286 Ndfip2-004 retained_intron Mus_musculus 0 255
ENSMUST00000166666 Gm17212-001 processed_pseudogene Mus_musculus 0 226
ENSMUST00000118067 Gm11380-001 processed_pseudogene Mus_musculus 0 195
ENSMUST00000121479 Gm12566-001 processed_pseudogene Mus_musculus 3e-21 106

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