| Transcript ID | Brain | Colon | Liver | Testis |
|---|---|---|---|---|
| ENSMUST00000033882 | 0.325±0.21 | 0.062±0.02 | 0.058±0.01 | 0.029±0.01 |
C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
||||||
| Description: | cholinergic receptor, nicotinic, alpha polypeptide 6 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENSMUST00000033882  |
Chrna6-201 |
ENSMUSG00000031491 |
10090 | - |
8:27403214-27413944  |
protein_coding |
Expression Patterns
|
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0009C5 | CIL_0009C5_0002 | VISTA | 8:26806327-27408431 |
| CIL_0007QT | CIL_0007QT_0002 | VISTA | 8:26806345-27408424 |
| CIL_0002IT | CIL_0002IT_0002 | CGP | 8:27368711-27413944 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0004889 | IMP | acetylcholine-activated cation-selective channel activity |
| GO:0005515 | IPI | protein binding |
| GO:0005892 | IDA | acetylcholine-gated channel complex |
| GO:0006812 | IMP | cation transport |
| GO:0014059 | IMP | regulation of dopamine secretion |
| GO:0030054 | IEA | cell junction |
| GO:0045211 | IEA | postsynaptic membrane |
| GO:0051899 | IMP | membrane depolarization |
| GO:0098655 | IEA | cation transmembrane transport |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSDART00000031546
|
chrna6-001 | protein_coding | Danio_rerio | 0 | 420 |
|
ENSDART00000079613
|
chrna2b-201 | protein_coding | Danio_rerio | 0 | 211 |
|
ENSDART00000136317
|
chrna2b-001 | protein_coding | Danio_rerio | 0 | 211 |
|
ENST00000240132
|
CHRNA2-004 | protein_coding | Homo_sapiens | 0 | 294 |
|
ENST00000276410
|
CHRNA6-001 | protein_coding | Homo_sapiens | 0 | 1271 |
|
ENST00000326828
|
CHRNA3-001 | protein_coding | Homo_sapiens | 0 | 470 |
|
ENST00000348639
|
CHRNA3-002 | protein_coding | Homo_sapiens | 0 | 470 |
|
ENST00000370263
|
CHRNA4-001 | protein_coding | Homo_sapiens | 0 | 276 |
|
ENST00000407991
|
CHRNA2-201 | protein_coding | Homo_sapiens | 0 | 294 |
|
ENST00000463705
|
CHRNA4-002 | processed_transcript | Homo_sapiens | 0 | 276 |
|
ENST00000467563
|
CHRNA4-004 | processed_transcript | Homo_sapiens | 0 | 276 |
|
ENST00000498043
|
CHRNA4-007 | nonsense_mediated_decay | Homo_sapiens | 0 | 276 |
|
ENST00000520933
|
CHRNA2-001 | protein_coding | Homo_sapiens | 0 | 294 |
|
ENST00000523529
|
CHRNA2-006 | retained_intron | Homo_sapiens | 0 | 294 |
|
ENST00000523695
|
CHRNA2-005 | nonsense_mediated_decay | Homo_sapiens | 0 | 254 |
|
ENST00000534622
|
CHRNA6-004 | protein_coding | Homo_sapiens | 0 | 1092 |
|
ENST00000558903
|
CHRNA3-008 | processed_transcript | Homo_sapiens | 0 | 285 |
|
ENST00000559658
|
CHRNA3-003 | nonsense_mediated_decay | Homo_sapiens | 0 | 470 |
|
ENST00000615287
|
CHRNA4-201 | protein_coding | Homo_sapiens | 0 | 276 |
