C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002R1_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000169903-ENSG00000018408 CGP 9606 3:149473974-149736714
GeneTranscriptPositionBiotype
ENSG00000018408 (WWTR1)
WW domain containing transcription regulator 1 		ENST00000360632 (WWTR1-004) 149520245-149658101 protein_coding
ENST00000460517 (WWTR1-007) 149657244-149658041 protein_coding
ENST00000465804 (WWTR1-001) 149517235-149703273 protein_coding
ENST00000467467 (WWTR1-003) 149520610-149658025 protein_coding
ENST00000471586 (WWTR1-012) 149520699-149541060 nonsense_mediated_decay
ENST00000472417 (WWTR1-010) 149520841-149576252 protein_coding
ENST00000474080 (WWTR1-002) 149701605-149736714 processed_transcript
ENST00000475579 (WWTR1-006) 149656978-149670909 protein_coding
ENST00000479238 (WWTR1-009) 149572864-149657435 protein_coding
ENST00000485244 (WWTR1-011) 149525805-149542439 retained_intron
ENST00000485352 (WWTR1-008) 149656891-149657767 protein_coding
ENST00000494754 (WWTR1-013) 149520722-149540266 nonsense_mediated_decay
ENSG00000169903 (TM4SF4)
transmembrane 4 L six family member 4 		ENST00000305354 (TM4SF4-001) 149473974-149503281 protein_coding
ENST00000463068 (TM4SF4-003) 149475784-149498911 retained_intron
ENST00000465758 (TM4SF4-002) 149474699-149487687 protein_coding
ENSG00000241985 (WWTR1-IT1)
WWTR1 intronic transcript 1 (non-protein coding) 		ENST00000463167 (WWTR1-IT1-001) 149648997-149650184 sense_intronic
ENSG00000244503 (RP11-278L15.6)
 ENST00000492880 (RP11-278L15.6-001) 149494660-149495995 processed_pseudogene
ENSG00000252581 (RNU6-1098P)
RNA, U6 small nuclear 1098, pseudogene 		ENST00000516772 (RNU6-1098P-201) 149525631-149525726 snRNA
CIL_0002R1_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027801-ENSMUSG00000027803 CGP 10090 3:57425314-57575910
GeneTranscriptPositionBiotype
ENSMUSG00000027801 (Tm4sf4)
transmembrane 4 superfamily member 4 		ENSMUST00000029377 (Tm4sf4-001) 57425314-57441677 protein_coding
ENSMUSG00000027803 (Wwtr1)
WW domain containing transcription regulator 1 		ENSMUST00000029380 (Wwtr1-001) 57455649-57575828 protein_coding
ENSMUST00000120977 (Wwtr1-002) 57455782-57575910 protein_coding
ENSMUSG00000083538 (Gm16016)
predicted gene 16016 		ENSMUST00000120831 (Gm16016-001) 57528232-57528781 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002R1_0001ENSG00000018408ENST00000360632ENST00000460517ENST00000465804ENST00000467467ENST00000471586ENST00000472417ENST00000474080ENST00000475579ENST00000479238ENST00000485244ENST00000485352ENST00000494754ENSG00000169903ENST00000305354ENST00000463068ENST00000465758ENSG00000241985ENST00000463167ENSG00000244503ENST00000492880ENSG00000252581ENST00000516772CIL_0002R1_0002ENSMUSG00000027801ENSMUST00000029377ENSMUSG00000027803ENSMUST00000029380ENSMUST00000120977ENSMUSG00000083538ENSMUST00000120831
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002R1_0001ENSG00000018408ENST00000360632ENST00000465804ENST00000474080ENSG00000169903ENST00000305354ENST00000463068ENST00000465758ENSG00000241985ENST00000463167ENSG00000244503ENST00000492880ENSG00000252581ENST00000516772CIL_0002R1_0002ENSMUSG00000027801ENSMUST00000029377ENSMUSG00000027803ENSMUST00000029380ENSMUST00000120977ENSMUSG00000083538ENSMUST00000120831
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000018408 ENST00000360632 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.466±0.00 N/A N/A N/A
ENST00000460517 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465804 N/A N/A 1.696±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 13.824±0.00 2.403±0.00 0.750±0.00
ENST00000467467 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471586 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472417 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474080 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.325±0.00 N/A N/A N/A
ENST00000475579 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479238 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485244 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485352 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494754 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000169903 ENST00000305354 0.012±0.00 0.033±0.00 N/A N/A 0.010±0.00 0.103±0.00 N/A 39.655±0.00 0.052±0.00 N/A N/A 0.074±0.02 0.034±0.00 0.067±0.03
ENST00000463068 0.072±0.00 0.100±0.00 N/A N/A N/A 2.828±0.00 N/A 0.278±0.00 41.605±0.00 0.288±0.00 N/A 0.063±0.00 0.143±0.00 N/A
ENST00000465758 N/A 0.132±0.00 N/A N/A N/A 3.188±0.00 N/A N/A 59.836±0.00 N/A N/A 0.058±0.00 0.043±0.00 N/A
ENSG00000241985 ENST00000463167 0.324±0.00 0.552±0.00 N/A 0.282±0.00 0.640±0.00 0.376±0.08 0.524±0.00 0.393±0.00 0.057±0.00 0.609±0.00 N/A 0.225±0.12 0.110±0.00 0.391±0.00
ENSG00000244503 ENST00000492880 0.010±0.00 0.041±0.00 N/A 0.031±0.00 0.129±0.08 0.019±0.00 0.056±0.00 0.262±0.24 0.241±0.00 0.019±0.00 N/A 0.009±0.00 N/A 0.029±0.01
ENSG00000252581 ENST00000516772 0.523±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.194±0.00 N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027801 ENSMUST00000029377 0.073±0.04 0.368±0.16 0.094±0.02 0.015±0.00 0.298±0.21 3.280±0.83 0.072±0.04 0.305±0.12 60.737±33.40 0.069±0.02 N/A 0.320±0.18 0.124±0.03 1.215±0.86
ENSMUSG00000027803 ENSMUST00000029380 41.851±7.57 29.966±4.88 30.841±0.57 5.478±3.77 27.350±9.93 15.169±0.85 16.835±1.72 19.584±2.52 3.096±1.17 50.930±7.01 4.964±0.55 42.308±17.47 17.283±12.00 2.517±1.90
ENSMUST00000120977 N/A N/A N/A 1.007±0.00 N/A N/A N/A N/A N/A N/A N/A 10.889±2.72 13.299±2.30 3.224±1.84
ENSMUSG00000083538 ENSMUST00000120831 0.382±0.05 0.273±0.00 N/A N/A 0.198±0.08 N/A 0.222±0.03 0.248±0.16 0.017±0.00 0.247±0.14 0.109±0.01 0.309±0.27 N/A N/A

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