C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: plexin D1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000015511 Plxnd1-001 ENSMUSG00000030123 10090 - 6:115954811-115995005 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000015511
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000015511 54.326±6.33 88.186±8.29 8.948±0.04 13.441±5.54 44.082±18.36 15.032±0.85 25.406±3.75 20.637±1.87 5.248±0.93 64.306±8.56 7.074±0.68 62.116±22.05 18.763±10.34 1.736±0.62

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000314 CIL_000314_0002 CGP 6:115944938-115995005
CIL_000315 CIL_000315_0002 CGP 6:115954811-116193486

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001525 IMP angiogenesis
GO:0001569 IMP patterning of blood vessels
GO:0003151 IMP outflow tract morphogenesis
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005886 IC plasma membrane
GO:0005887 IDA integral component of plasma membrane
GO:0007416 IMP synapse assembly
GO:0017154 IPI semaphorin receptor activity
GO:0019904 IEA protein domain specific binding
GO:0030027 IEA lamellipodium
GO:0030334 IMP regulation of cell migration
GO:0032092 IDA positive regulation of protein binding
GO:0043542 IMP endothelial cell migration
GO:0045765 IMP regulation of angiogenesis
GO:0060666 IDA dichotomous subdivision of terminal units involved in salivary gland branching
GO:0071526 IGI semaphorin-plexin signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000296440 PLXNB1-001 protein_coding Homo_sapiens 0 200
ENST00000324093 PLXND1-001 protein_coding Homo_sapiens 0 6708
ENST00000358536 PLXNB1-003 protein_coding Homo_sapiens 0 200
ENST00000456774 PLXNB1-005 protein_coding Homo_sapiens 0 200
ENST00000478171 PLXNB1-011 retained_intron Homo_sapiens 6e-33 145
ENST00000485535 PLXNB1-002 retained_intron Homo_sapiens 0 200
ENST00000501038 PLXND1-003 retained_intron Homo_sapiens 0.00000000000001 86
ENST00000503166 PLXND1-013 retained_intron Homo_sapiens 0 651
ENST00000504524 PLXND1-002 retained_intron Homo_sapiens 0 575
ENST00000504689 PLXND1-018 protein_coding Homo_sapiens 0.00000000009 71
ENST00000504767 PLXND1-011 retained_intron Homo_sapiens 0 588
ENST00000504979 PLXND1-015 retained_intron Homo_sapiens 0 396
ENST00000505665 PLXND1-007 nonsense_mediated_decay Homo_sapiens 1e-38 163
ENST00000506979 PLXND1-014 protein_coding Homo_sapiens 0 802
ENST00000511018 PLXND1-010 retained_intron Homo_sapiens 0 649
ENST00000512744 PLXND1-005 nonsense_mediated_decay Homo_sapiens 0 1925
ENST00000514990 PLXND1-012 retained_intron Homo_sapiens 0 464
ENST00000515191 PLXND1-009 retained_intron Homo_sapiens 0 405

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