C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: keratin 8 pseudogene 41
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000533985 KRT8P41-001 ENSG00000213538 9606 + 11:9094377-9095890 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENST00000533985
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000533985 0.038±0.00 0.042±0.00 0.080±0.00 0.015±0.00 0.014±0.00 0.015±0.00 0.066±0.00 0.015±0.00 0.021±0.00 0.019±0.00 0.391±0.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000498 CIL_000498_0001 CGP 11:8980576-9138114
CIL_000499 CIL_000499_0001 CGP 11:9020391-9265390

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000023952 Krt8-201 protein_coding Mus_musculus 0 1140
ENSMUST00000023709 Krt5-001 protein_coding Mus_musculus 0 390
ENSMUST00000068904 Krt7-001 protein_coding Mus_musculus 0 285
ENSMUST00000042957 Krt75-001 protein_coding Mus_musculus 0 215
ENSMUST00000131069 Krt7-002 retained_intron Mus_musculus 0 213
ENSMUST00000023797 Krt4-201 protein_coding Mus_musculus 3e-40 171
ENSMUST00000147662 Krt7-003 protein_coding Mus_musculus 1e-33 148
ENSMUST00000148248 Vim-004 retained_intron Mus_musculus 6e-17 94
ENSMUST00000028062 Vim-001 protein_coding Mus_musculus 6e-17 94

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