C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sperm specific antigen 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000111788 Ssfa2-003 ENSMUSG00000027007 10090 + 2:79635426-79672966 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonKidneyLiverLungOvaryTestisENSMUST00000111788
Transcript ID Adrenal Breast Colon Kidney Liver Lung Ovary Testis
ENSMUST00000111788 5.791±0.55 1.491±0.88 2.616±0.18 2.961±0.20 1.453±0.00 2.054±0.14 1.963±1.26 0.907±0.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00080Y CIL_00080Y_0002 VISTA 2:79161477-79762272
CIL_0004BY CIL_0004BY_0003 CGP 2:79452521-79672966
CIL_0004BV CIL_0004BV_0003 CGP 2:79635352-79818496

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005102 IEA receptor binding
GO:0005886 IEA plasma membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000320370 SSFA2-002 protein_coding Homo_sapiens 0 3681
ENST00000409001 SSFA2-004 protein_coding Homo_sapiens 0 2719
ENST00000416081 SSFA2-007 nonsense_mediated_decay Homo_sapiens 0 2601
ENST00000431877 SSFA2-001 protein_coding Homo_sapiens 0 3053
ENST00000440623 SSFA2-006 nonsense_mediated_decay Homo_sapiens 0 2089
ENST00000454579 SSFA2-005 nonsense_mediated_decay Homo_sapiens 0 2261
ENST00000470654 SSFA2-015 retained_intron Homo_sapiens 0 710
ENST00000480753 SSFA2-003 retained_intron Homo_sapiens 0 455
ENST00000491720 SSFA2-008 retained_intron Homo_sapiens 0 1371
ENST00000495248 SSFA2-014 processed_transcript Homo_sapiens 0 259

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