C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 3617
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000173076 Gm3617-001 ENSMUSG00000092563 10090 + 1:39314899-39315453 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainColonLiverLungOvaryPlacentaENSMUST00000173076
Transcript ID Adipose Bladder Brain Colon Liver Lung Ovary Placenta
ENSMUST00000173076 0.146±0.00 0.182±0.10 0.299±0.00 0.266±0.00 0.060±0.06 0.133±0.00 0.079±0.00 0.070±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004HH CIL_0004HH_0002 CGP 1:38987814-39363234
CIL_0008TG CIL_0008TG_0002 VISTA 1:39141367-39744845
CIL_0004HI CIL_0004HI_0002 CGP 1:39193731-39371908

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000332968 RPL17-C18orf32-003 protein_coding Homo_sapiens 0 505
ENST00000391360 RP11-347C18.1-001 processed_pseudogene Homo_sapiens 0 538
ENST00000394133 RP11-624L12.1-001 processed_pseudogene Homo_sapiens 0 597
ENST00000396131 RPL17P50-001 processed_pseudogene Homo_sapiens 0 544
ENST00000404330 RPL17P25-001 processed_pseudogene Homo_sapiens 0 560
ENST00000404382 RP3-472M2.2-001 processed_pseudogene Homo_sapiens 0 311
ENST00000407033 RPL17P26-001 processed_pseudogene Homo_sapiens 0 597
ENST00000414070 RP11-20O24.4-001 processed_pseudogene Homo_sapiens 0 671
ENST00000416091 AC007272.3-001 processed_pseudogene Homo_sapiens 0 385
ENST00000417063 AC020983.5-001 processed_pseudogene Homo_sapiens 0 562
ENST00000417593 RPL17P11-001 processed_pseudogene Homo_sapiens 0 387
ENST00000418495 RPL17-201 protein_coding Homo_sapiens 0 682
ENST00000420302 RP11-215A21.2-001 processed_pseudogene Homo_sapiens 0 617
ENST00000422360 RPL17P43-001 processed_pseudogene Homo_sapiens 0 431
ENST00000429025 CTA-440B3.1-001 processed_pseudogene Homo_sapiens 0 370
ENST00000442115 RP11-11M20.2-001 processed_pseudogene Homo_sapiens 0 279
ENST00000443728 RPL17P49-001 processed_pseudogene Homo_sapiens 1e-33 147
ENST00000444020 RP11-1029M24.1-001 processed_pseudogene Homo_sapiens 0 575
ENST00000445304 RPL17P1-001 processed_pseudogene Homo_sapiens 0 457
ENST00000445757 AC007677.2-001 processed_pseudogene Homo_sapiens 0 363
ENST00000446498 RP3-476K8.4-001 processed_pseudogene Homo_sapiens 0 601
ENST00000447415 RP4-612B15.2-001 processed_pseudogene Homo_sapiens 0 616
ENST00000448403 RP11-383G10.3-001 processed_pseudogene Homo_sapiens 0 580
ENST00000452862 AC144530.1-001 processed_pseudogene Homo_sapiens 0 627
ENST00000456309 RP11-317B3.2-001 processed_pseudogene Homo_sapiens 0 407
ENST00000461464 RPL17P20-001 processed_pseudogene Homo_sapiens 0 566
ENST00000467688 RPL17P22-001 processed_pseudogene Homo_sapiens 0 603
ENST00000469329 RPL17P41-001 processed_pseudogene Homo_sapiens 0 542
ENST00000471722 RP4-706A16.3-001 processed_pseudogene Homo_sapiens 0 688
ENST00000483964 RP11-7F18.1-001 processed_pseudogene Homo_sapiens 0 518
ENST00000485656 RP11-273P3.1-001 processed_pseudogene Homo_sapiens 0 298
ENST00000488371 RP11-864J10.2-001 processed_pseudogene Homo_sapiens 0 444
ENST00000488887 AF131215.1-001 processed_pseudogene Homo_sapiens 0 350
ENST00000490729 RPL17P37-001 processed_pseudogene Homo_sapiens 0 420
ENST00000491913 RPL17P2-001 processed_pseudogene Homo_sapiens 0 394
ENST00000498103 RP11-592N21.1-001 processed_pseudogene Homo_sapiens 0 660
ENST00000498256 RPL17P33-001 processed_pseudogene Homo_sapiens 0 625
ENST00000504072 CTD-2218G20.1-001 processed_pseudogene Homo_sapiens 0 189
ENST00000524791 RP11-757C15.4-001 processed_pseudogene Homo_sapiens 0 291
ENST00000577910 RPL17-C18orf32-002 nonsense_mediated_decay Homo_sapiens 0 682
ENST00000578532 RPL17-017 protein_coding Homo_sapiens 0 627
ENST00000579248 RPL17-018 protein_coding Homo_sapiens 0 682
ENST00000579408 RPL17-003 protein_coding Homo_sapiens 0 682
ENST00000579820 C18orf32-201 protein_coding Homo_sapiens 0 505
ENST00000580210 RPL17-015 protein_coding Homo_sapiens 0 638
ENST00000580261 RPL17-001 protein_coding Homo_sapiens 0 682
ENST00000580387 RPL17-019 protein_coding Homo_sapiens 0 464
ENST00000581091 RPL17-012 processed_transcript Homo_sapiens 0 507
ENST00000581373 RPL17-002 protein_coding Homo_sapiens 0 571
ENST00000581741 RPL17-009 retained_intron Homo_sapiens 0 346
ENST00000582935 RPL17-013 retained_intron Homo_sapiens 0 294
ENST00000583036 RPL17-008 protein_coding Homo_sapiens 0 499
ENST00000583637 RPL17-016 protein_coding Homo_sapiens 0 643
ENST00000584364 RPL17-014 retained_intron Homo_sapiens 0 575
ENST00000584895 RPL17-C18orf32-001 protein_coding Homo_sapiens 0 616
ENST00000596405 CTD-2550O8.7-001 processed_pseudogene Homo_sapiens 0 462
ENST00000605218 RPL17P51-001 processed_pseudogene Homo_sapiens 5e-35 150
ENST00000615479 RPL17-025 protein_coding Homo_sapiens 0 364
ENST00000615760 RPL17-024 protein_coding Homo_sapiens 0 475
ENST00000617346 RPL17-022 protein_coding Homo_sapiens 0 616
ENST00000618613 RPL17-202 protein_coding Homo_sapiens 0 682
ENST00000618619 RPL17-023 protein_coding Homo_sapiens 0 682

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