C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pre-B-cell leukemia transcription factor 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000104683 pbx4-001 ENSDARG00000052150 7955 + 3:53637984-53714491 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000104683
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000104683 8.413±2.48 6.370±2.05 2.702±0.00 0.672±0.00 2.496±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004NP CIL_0004NP_0001 CGP 3:53637984-53730531

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001755 IMP neural crest cell migration
GO:0001764 IDA neuron migration
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005667 IC transcription factor complex
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0007411 IDA axon guidance
GO:0007420 IMP brain development
GO:0030182 IMP neuron differentiation
GO:0030901 IGI midbrain development
GO:0030902 IGI hindbrain development
GO:0031016 IMP pancreas development
GO:0043565 IEA sequence-specific DNA binding
GO:0045893 IGI positive regulation of transcription, DNA-dependent
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter
GO:0048666 IMP neuron development
GO:0048701 IMP embryonic cranial skeleton morphogenesis
GO:0048741 IGI skeletal muscle fiber development
GO:0060059 IGI embryonic retina morphogenesis in camera-type eye

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000064438 Pbx1-005 protein_coding Mus_musculus 0 468
ENSMUST00000072863 Pbx1-201 protein_coding Mus_musculus 0 549
ENSMUST00000176540 Pbx1-002 protein_coding Mus_musculus 0 549
ENSMUST00000176790 Pbx1-004 protein_coding Mus_musculus 0 549
ENSMUST00000188912 Pbx1-001 protein_coding Mus_musculus 0 549
ENST00000251203 PBX4-001 protein_coding Homo_sapiens 0 453
ENST00000367897 PBX1-002 protein_coding Homo_sapiens 0 562
ENST00000420696 PBX1-001 protein_coding Homo_sapiens 0 562
ENST00000468104 PBX1-004 processed_transcript Homo_sapiens 0 490
ENST00000482110 PBX1-009 protein_coding Homo_sapiens 0 303
ENST00000496120 PBX1-016 processed_transcript Homo_sapiens 0 490
ENST00000540236 PBX1-201 protein_coding Homo_sapiens 0 490
ENST00000557978 PBX4-003 nonsense_mediated_decay Homo_sapiens 1e-38 165
ENST00000558222 PBX4-002 nonsense_mediated_decay Homo_sapiens 8e-39 165
ENST00000558837 PBX1-019 protein_coding Homo_sapiens 0 318
ENST00000559240 PBX1-012 protein_coding Homo_sapiens 0 479
ENST00000559578 PBX1-013 protein_coding Homo_sapiens 0 340
ENST00000559735 PBX4-005 retained_intron Homo_sapiens 3e-17 94
ENST00000560469 PBX1-015 processed_transcript Homo_sapiens 0 490
ENST00000560641 PBX1-017 protein_coding Homo_sapiens 0 490
ENST00000612123 PBX1-202 protein_coding Homo_sapiens 0 490

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