C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spectrin repeat containing, nuclear envelope 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000085280 Syne2-006 ENSMUSG00000063450 10090 + 12:76031614-76110920 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainHeartLiverMuscleOvaryPlacentaTestisENSMUST00000085280
Transcript ID Adipose Bladder Brain Heart Liver Muscle Ovary Placenta Testis
ENSMUST00000085280 1.522±0.24 4.408±0.03 1.972±1.00 0.916±0.25 0.212±0.06 0.897±0.15 50.616±26.35 2.896±2.06 7.049±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004WO CIL_0004WO_0002 CGP 12:75714248-76110926
CIL_00010O CIL_00010O_0002 CGP 12:75818134-76177259

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005635 IDA nuclear envelope
GO:0005640 IDA nuclear outer membrane
GO:0006998 IMP nuclear envelope organization
GO:0007163 IMP establishment or maintenance of cell polarity
GO:0010761 IMP fibroblast migration
GO:0016021 IEA integral component of membrane
GO:0030016 IDA myofibril
GO:0030018 IDA Z disc
GO:0031965 IDA nuclear membrane
GO:0034504 IMP protein localization to nucleus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000344113 SYNE2-001 protein_coding Homo_sapiens 0 4401
ENST00000357395 SYNE2-201 protein_coding Homo_sapiens 0 1543
ENST00000358025 SYNE2-202 protein_coding Homo_sapiens 0 5275
ENST00000394768 SYNE2-014 protein_coding Homo_sapiens 0 4401
ENST00000441438 SYNE2-007 protein_coding Homo_sapiens 0 303
ENST00000458046 SYNE2-006 protein_coding Homo_sapiens 0 813
ENST00000553289 SYNE2-013 nonsense_mediated_decay Homo_sapiens 0 1600
ENST00000553801 SYNE2-016 processed_transcript Homo_sapiens 0 298
ENST00000553806 SYNE2-019 retained_intron Homo_sapiens 0 800
ENST00000554584 SYNE2-002 protein_coding Homo_sapiens 0 1620
ENST00000554805 SYNE2-005 protein_coding Homo_sapiens 0 1101
ENST00000554997 SYNE2-020 retained_intron Homo_sapiens 0 518
ENST00000555002 SYNE2-011 protein_coding Homo_sapiens 0 5275
ENST00000555022 SYNE2-009 protein_coding Homo_sapiens 0 1367
ENST00000555241 SYNE2-018 processed_transcript Homo_sapiens 0 436
ENST00000555612 SYNE2-008 nonsense_mediated_decay Homo_sapiens 0 2466
ENST00000556906 SYNE2-017 protein_coding Homo_sapiens 0 656

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