C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spectrin repeat containing, nuclear envelope 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000139204 Syne2-007 ENSMUSG00000063450 10090 + 12:76048578-76110900 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000139204
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000139204 3.780±0.89 2.811±0.66 5.055±0.85 5.386±1.71 2.499±0.86 8.411±1.14 1.190±0.17 8.604±2.07 0.882±0.44 8.242±0.99 28.676±6.66 1.524±0.10 5.287±0.43

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004WO CIL_0004WO_0002 CGP 12:75714248-76110926
CIL_00010O CIL_00010O_0002 CGP 12:75818134-76177259

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000344113 SYNE2-001 protein_coding Homo_sapiens 0 4015
ENST00000357395 SYNE2-201 protein_coding Homo_sapiens 0 1232
ENST00000358025 SYNE2-202 protein_coding Homo_sapiens 0 3251
ENST00000394768 SYNE2-014 protein_coding Homo_sapiens 0 4015
ENST00000441438 SYNE2-007 protein_coding Homo_sapiens 0 289
ENST00000458046 SYNE2-006 protein_coding Homo_sapiens 0 289
ENST00000553289 SYNE2-013 nonsense_mediated_decay Homo_sapiens 0 2364
ENST00000553801 SYNE2-016 processed_transcript Homo_sapiens 0 298
ENST00000553806 SYNE2-019 retained_intron Homo_sapiens 0 800
ENST00000554584 SYNE2-002 protein_coding Homo_sapiens 0 1232
ENST00000554805 SYNE2-005 protein_coding Homo_sapiens 0 1866
ENST00000554997 SYNE2-020 retained_intron Homo_sapiens 0 518
ENST00000555002 SYNE2-011 protein_coding Homo_sapiens 0 3251
ENST00000555022 SYNE2-009 protein_coding Homo_sapiens 0 2132
ENST00000555241 SYNE2-018 processed_transcript Homo_sapiens 0 436
ENST00000555612 SYNE2-008 nonsense_mediated_decay Homo_sapiens 0 1886
ENST00000556906 SYNE2-017 protein_coding Homo_sapiens 0 656
ENST00000557084 SYNE2-022 nonsense_mediated_decay Homo_sapiens 0 457

Loading