C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005B7_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000076810-ENSDARG00000018782 CGP 7955 6:2810030-3126079
GeneTranscriptPositionBiotype
ENSDARG00000076810 (ptprfa)
protein tyrosine phosphatase, receptor type, f, a 		ENSDART00000026738 (ptprfa-201) 2810030-3081396 protein_coding
ENSDART00000136261 (ptprfa-002) 3025300-3056407 processed_transcript
ENSDART00000142544 (ptprfa-001) 2973878-3080584 protein_coding
CIL_0005B7_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000142949-ENSG00000066135 CGP 9606 1:43525187-43705515
GeneTranscriptPositionBiotype
ENSG00000066135 (KDM4A)
lysine (K)-specific demethylase 4A 		ENST00000372396 (KDM4A-001) 43650158-43705515 protein_coding
ENST00000463151 (KDM4A-002) 43650536-43667021 processed_transcript
ENST00000472265 (KDM4A-005) 43666285-43667062 processed_transcript
ENST00000481296 (KDM4A-004) 43690590-43692278 processed_transcript
ENST00000485249 (KDM4A-003) 43653306-43667021 processed_transcript
ENSG00000142949 (PTPRF)
protein tyrosine phosphatase, receptor type, F 		ENST00000359947 (PTPRF-001) 43530876-43623666 protein_coding
ENST00000372405 (PTPRF-004) 43538198-43580078 processed_transcript
ENST00000372407 (PTPRF-005) 43598839-43623663 protein_coding
ENST00000412568 (PTPRF-014) 43591021-43622283 protein_coding
ENST00000414879 (PTPRF-006) 43591450-43622842 protein_coding
ENST00000429895 (PTPRF-015) 43591053-43623654 protein_coding
ENST00000436724 (PTPRF-003) 43530903-43580078 processed_transcript
ENST00000437607 (PTPRF-013) 43545076-43579284 protein_coding
ENST00000438120 (PTPRF-002) 43530890-43622357 protein_coding
ENST00000463041 (PTPRF-012) 43605582-43606868 processed_transcript
ENST00000467464 (PTPRF-011) 43582480-43591118 processed_transcript
ENST00000477970 (PTPRF-007) 43613140-43622863 processed_transcript
ENST00000481019 (PTPRF-010) 43528562-43553539 processed_transcript
ENST00000496043 (PTPRF-009) 43525187-43553519 processed_transcript
ENST00000496447 (PTPRF-008) 43598074-43623666 processed_transcript
ENST00000617451 (PTPRF-201) 43530876-43579285 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005B7_0001ENSDARG00000076810ENSDART00000026738ENSDART00000136261ENSDART00000142544CIL_0005B7_0002ENSG00000066135ENST00000372396ENST00000463151ENST00000472265ENST00000481296ENST00000485249ENSG00000142949ENST00000359947ENST00000372405ENST00000372407ENST00000412568ENST00000414879ENST00000429895ENST00000436724ENST00000437607ENST00000438120ENST00000463041ENST00000467464ENST00000477970ENST00000481019ENST00000496043ENST00000496447ENST00000617451
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005B7_0001ENSDARG00000076810ENSDART00000026738ENSDART00000136261ENSDART00000142544CIL_0005B7_0002ENSG00000066135ENST00000372396ENST00000485249ENSG00000142949ENST00000359947ENST00000372407ENST00000414879ENST00000429895ENST00000437607ENST00000438120ENST00000477970ENST00000496447ENST00000617451
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000076810 ENSDART00000026738 N/A N/A N/A 7.314±3.15 N/A N/A 0.202±0.01 3.867±2.10 N/A N/A N/A N/A N/A N/A
ENSDART00000136261 N/A N/A N/A N/A N/A N/A 0.663±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000142544 N/A N/A N/A 8.416±3.36 N/A N/A 0.152±0.00 N/A N/A N/A 0.616±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000066135 ENST00000372396 4.764±0.00 3.761±0.00 N/A 3.513±2.08 3.838±2.41 2.269±0.38 2.184±1.61 4.718±1.95 1.267±0.36 2.756±0.15 2.541±1.16 4.923±3.91 6.946±1.33 2.066±0.90
ENST00000463151 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472265 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481296 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485249 N/A N/A 2.568±0.00 N/A N/A N/A N/A N/A N/A N/A 2.016±0.00 4.298±0.00 N/A N/A
ENSG00000142949 ENST00000359947 N/A 1.267±0.00 N/A 3.473±0.00 4.831±0.00 N/A N/A 9.117±0.00 10.955±0.00 5.798±4.11 0.470±0.00 N/A 6.213±0.00 N/A
ENST00000372405 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000372407 7.145±0.00 2.485±0.00 N/A 8.531±7.58 31.051±0.00 12.007±0.00 0.356±0.14 15.219±0.00 29.185±0.00 6.699±4.92 N/A 4.413±1.92 26.455±0.00 7.373±0.00
ENST00000412568 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000414879 7.820±0.00 N/A N/A 0.754±0.00 N/A N/A 0.107±0.00 N/A 1.524±0.00 N/A N/A 10.485±0.00 44.272±0.00 4.007±0.00
ENST00000429895 6.999±0.00 2.830±0.00 N/A N/A 28.855±0.00 7.066±0.00 0.378±0.00 6.806±0.00 14.154±0.00 9.698±0.00 0.254±0.00 11.977±10.44 20.782±4.73 4.437±2.30
ENST00000436724 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000437607 N/A N/A N/A N/A 12.359±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000438120 N/A N/A 0.841±0.00 8.543±0.00 12.540±10.48 8.196±0.00 0.089±0.00 6.434±0.00 2.180±0.00 N/A 0.189±0.00 1.484±0.00 12.412±4.03 2.313±0.87
ENST00000463041 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467464 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477970 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.475±0.00 N/A N/A N/A
ENST00000481019 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496043 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496447 N/A 1.342±0.00 N/A N/A 2.794±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.025±0.00
ENST00000617451 N/A N/A N/A N/A N/A N/A 0.628±0.00 N/A N/A N/A 1.842±0.00 N/A N/A N/A

Loading