C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005DR_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000166135-ENSG00000075891 CGP 9606 10:100529072-100829941
GeneTranscriptPositionBiotype
ENSG00000075891 (PAX2)
paired box 2 		ENST00000355243 (PAX2-001) 100745711-100829941 protein_coding
ENST00000361791 (PAX2-006) 100746220-100829589 protein_coding
ENST00000370296 (PAX2-002) 100745711-100829941 protein_coding
ENST00000427256 (PAX2-003) 100746228-100786970 protein_coding
ENST00000428433 (PAX2-201) 100745711-100829941 protein_coding
ENST00000483202 (PAX2-004) 100746264-100749916 retained_intron
ENST00000553492 (PAX2-008) 100735603-100806599 processed_transcript
ENST00000554172 (PAX2-005) 100748850-100824654 protein_coding
ENST00000554363 (PAX2-007) 100746179-100809184 processed_transcript
ENSG00000166135 (HIF1AN)
hypoxia inducible factor 1, alpha subunit inhibitor 		ENST00000299163 (HIF1AN-002) 100535859-100559998 protein_coding
ENST00000478787 (HIF1AN-003) 100536470-100545497 retained_intron
ENST00000526476 (HIF1AN-005) 100535915-100545968 nonsense_mediated_decay
ENST00000528044 (HIF1AN-006) 100536198-100540728 processed_transcript
ENST00000533589 (HIF1AN-004) 100529072-100546581 protein_coding
ENSG00000166136 (NDUFB8)
NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa 		ENST00000299166 (NDUFB8-005) 100523740-100529864 protein_coding
ENST00000370320 (NDUFB8-003) 100523937-100529864 protein_coding
ENST00000370322 (NDUFB8-006) 100523743-100530000 protein_coding
ENST00000464651 (NDUFB8-001) 100523740-100526598 retained_intron
ENST00000466088 (NDUFB8-004) 100526049-100529862 retained_intron
ENST00000528425 (NDUFB8-010) 100524033-100529870 nonsense_mediated_decay
ENST00000529437 (NDUFB8-007) 100526717-100529883 retained_intron
ENST00000531189 (NDUFB8-009) 100529043-100529879 retained_intron
ENST00000531418 (NDUFB8-008) 100526744-100529879 retained_intron
ENSG00000274660 (Metazoa_SRP)
Metazoan signal recognition particle RNA 		ENST00000613464 (Metazoa_SRP.1-289) 100666695-100667009 misc_RNA
CIL_0005DR_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000036450-ENSMUSG00000004231 CGP 10090 19:44562850-44837871
GeneTranscriptPositionBiotype
ENSMUSG00000004231 (Pax2)
paired box 2 		ENSMUST00000004340 (Pax2-201) 44757394-44837871 protein_coding
ENSMUST00000173346 (Pax2-004) 44759915-44818554 protein_coding
ENSMUST00000174490 (Pax2-001) 44756045-44837851 protein_coding
ENSMUSG00000036450 (Hif1an)
hypoxia-inducible factor 1, alpha subunit inhibitor 		ENSMUST00000040455 (Hif1an-001) 44562850-44576274 protein_coding
ENSMUST00000131032 (Hif1an-002) 44562850-44563952 retained_intron
ENSMUSG00000092369 (1700039E22Rik)
RIKEN cDNA 1700039E22 gene 		ENSMUST00000174082 (1700039E22Rik-001) 44828493-44835938 antisense
ENSMUSG00000092469 (Gm20395)
predicted gene 20395 		ENSMUST00000173799 (Gm20395-001) 44773762-44784512 antisense
ENSMUSG00000097683 (Gm26644)
predicted gene, 26644 		ENSMUST00000181365 (Gm26644-201) 44692367-44695275 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005DR_0001ENSG00000075891ENST00000355243ENST00000361791ENST00000370296ENST00000427256ENST00000428433ENST00000483202ENST00000553492ENST00000554172ENST00000554363ENSG00000166135ENST00000299163ENST00000478787ENST00000526476ENST00000528044ENST00000533589ENSG00000166136ENST00000299166ENST00000370320ENST00000370322ENST00000464651ENST00000466088ENST00000528425ENST00000529437ENST00000531189ENST00000531418ENSG00000274660ENST00000613464CIL_0005DR_0002ENSMUSG00000004231ENSMUST00000004340ENSMUST00000173346ENSMUST00000174490ENSMUSG00000036450ENSMUST00000040455ENSMUST00000131032ENSMUSG00000092369ENSMUST00000174082ENSMUSG00000092469ENSMUST00000173799ENSMUSG00000097683ENSMUST00000181365
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005DR_0001ENSG00000075891ENST00000355243ENST00000361791ENST00000427256ENST00000483202ENST00000553492ENST00000554172ENSG00000166135ENST00000299163ENST00000533589ENSG00000166136ENST00000299166ENST00000464651ENST00000466088ENSG00000274660ENST00000613464CIL_0005DR_0002ENSMUSG00000004231ENSMUST00000004340ENSMUST00000173346ENSMUST00000174490ENSMUSG00000036450ENSMUST00000040455ENSMUSG00000092369ENSMUST00000174082ENSMUSG00000092469ENSMUST00000173799ENSMUSG00000097683ENSMUST00000181365
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000075891 ENST00000355243 N/A N/A N/A N/A N/A N/A N/A 5.431±0.00 N/A N/A N/A N/A N/A N/A
ENST00000361791 N/A 0.019±0.00 N/A 0.129±0.00 N/A N/A N/A 11.684±0.00 N/A 0.060±0.00 N/A 0.838±1.09 0.087±0.00 1.738±1.54
ENST00000370296 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000427256 N/A N/A N/A N/A 0.314±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.240±0.00
ENST00000428433 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483202 N/A N/A N/A N/A N/A N/A N/A N/A 0.031±0.00 N/A N/A N/A 0.048±0.00 2.858±0.00
ENST00000553492 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.112±0.00 N/A
ENST00000554172 N/A N/A 2.742±0.00 N/A N/A N/A N/A N/A 0.041±0.00 N/A N/A 0.064±0.00 N/A N/A
ENST00000554363 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000166135 ENST00000299163 2.530±0.00 1.983±0.00 0.676±0.00 2.130±0.89 2.430±1.35 3.203±0.00 2.187±1.55 2.216±1.78 1.343±0.16 1.200±0.46 4.029±2.49 3.704±1.75 3.067±1.08 7.327±0.80
ENST00000478787 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526476 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000528044 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533589 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 39.107±0.00
ENSG00000166136 ENST00000299166 98.090±0.00 160.945±0.00 12.145±0.00 153.317±59.38 124.483±0.00 109.776±70.50 90.729±58.53 107.336±68.80 70.003±36.76 50.896±37.82 47.134±1.26 128.575±67.11 111.180±25.53 132.320±0.00
ENST00000370320 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000370322 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464651 N/A N/A 21.870±0.00 N/A N/A N/A N/A N/A N/A N/A 44.449±0.00 N/A N/A N/A
ENST00000466088 N/A N/A N/A N/A 10.150±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000528425 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529437 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531189 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531418 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000274660 ENST00000613464 0.103±0.00 2.040±0.00 N/A 0.584±0.00 0.721±0.00 0.356±0.00 0.201±0.00 0.880±0.00 N/A 1.303±0.00 1.911±0.00 0.364±0.00 N/A 0.296±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000004231 ENSMUST00000004340 1.448±0.00 N/A 0.016±0.00 1.724±2.28 N/A 0.010±0.00 0.008±0.00 5.372±1.15 N/A N/A N/A 0.946±0.48 0.439±0.37 0.722±0.35
ENSMUST00000173346 0.874±0.00 N/A 0.002±0.00 0.013±0.00 N/A N/A N/A N/A 0.015±0.00 0.020±0.00 N/A N/A 0.027±0.00 N/A
ENSMUST00000174490 0.797±0.06 N/A 0.003±0.00 1.354±1.75 N/A N/A N/A 3.434±0.86 0.004±0.00 N/A N/A 0.776±0.26 0.092±0.07 0.401±0.00
ENSMUSG00000036450 ENSMUST00000040455 8.670±4.29 8.410±1.19 6.297±0.62 7.057±3.31 12.540±5.30 11.945±1.66 7.458±1.29 8.573±0.37 5.307±1.89 14.135±1.95 42.374±4.96 13.088±3.38 10.112±3.75 9.106±2.58
ENSMUST00000131032 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000092369 ENSMUST00000174082 0.277±0.06 N/A N/A 0.178±0.00 N/A N/A N/A 0.470±0.23 N/A N/A N/A 0.217±0.12 0.127±0.05 0.443±0.16
ENSMUSG00000092469 ENSMUST00000173799 N/A N/A 0.013±0.00 N/A N/A N/A N/A 0.118±0.06 N/A N/A N/A 0.241±0.22 0.042±0.03 0.097±0.00
ENSMUSG00000097683 ENSMUST00000181365 N/A N/A N/A 0.193±0.00 N/A N/A N/A 0.036±0.00 N/A N/A N/A N/A 0.047±0.05 N/A

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