C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005GF_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000125378-ENSG00000100526 CGP 9606 14:53949736-54420218
GeneTranscriptPositionBiotype
ENSG00000100526 (CDKN3)
cyclin-dependent kinase inhibitor 3 		ENST00000216414 (CDKN3-005) 54399889-54420116 processed_transcript
ENST00000335183 (CDKN3-001) 54396955-54420218 protein_coding
ENST00000395577 (CDKN3-201) 54408564-54420214 protein_coding
ENST00000442975 (CDKN3-003) 54396995-54420212 protein_coding
ENST00000458126 (CDKN3-002) 54397000-54420218 protein_coding
ENST00000541304 (CDKN3-004) 54397029-54414219 protein_coding
ENST00000543789 (CDKN3-009) 54396979-54417951 protein_coding
ENST00000555837 (CDKN3-008) 54396849-54417951 processed_transcript
ENST00000556102 (CDKN3-010) 54397003-54420218 protein_coding
ENST00000556305 (CDKN3-011) 54399926-54418414 processed_transcript
ENST00000611205 (CDKN3-202) 54396955-54420214 protein_coding
ENST00000620759 (CDKN3-203) 54399888-54420116 protein_coding
ENSG00000125378 (BMP4)
bone morphogenetic protein 4 		ENST00000245451 (BMP4-001) 53949736-53956811 protein_coding
ENST00000417573 (BMP4-201) 53949739-53954552 protein_coding
ENST00000558489 (BMP4-005) 53955466-53956648 processed_transcript
ENST00000558961 (BMP4-007) 53950622-53952147 protein_coding
ENST00000558984 (BMP4-003) 53949741-53953455 protein_coding
ENST00000559087 (BMP4-002) 53949736-53956811 protein_coding
ENST00000559501 (BMP4-006) 53950255-53953429 protein_coding
ENST00000559642 (BMP4-004) 53951892-53958761 protein_coding
ENST00000609748 (BMP4-008) 53951423-53951880 protein_coding
ENSG00000224004 (ATP5C1P1)
ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1 pseudogene 1 		ENST00000441945 (ATP5C1P1-001) 53991101-53991995 processed_pseudogene
CIL_0005GF_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000021835-ENSMUSG00000037628 CGP 10090 14:46383520-46771525
GeneTranscriptPositionBiotype
ENSMUSG00000021835 (Bmp4)
bone morphogenetic protein 4 		ENSMUST00000074077 (Bmp4-001) 46383520-46390669 protein_coding
ENSMUST00000100676 (Bmp4-002) 46383707-46390550 protein_coding
ENSMUST00000135408 (Bmp4-003) 46386996-46390535 retained_intron
ENSMUSG00000037628 (Cdkn3)
cyclin-dependent kinase inhibitor 3 		ENSMUST00000067426 (Cdkn3-201) 46760541-46771525 protein_coding
ENSMUSG00000079261 (Gm15217)
predicted gene 15217 		ENSMUST00000111826 (Gm15217-001) 46379467-46383608 protein_coding
ENSMUST00000141358 (Gm15217-002) 46379414-46383418 processed_transcript
ENSMUST00000147092 (Gm15217-003) 46381127-46383368 processed_transcript
ENSMUSG00000085123 (Gm15219)
RNA upstream of Bmp4 expressed in inner ear 		ENSMUST00000151828 (Gm15219-001) 46570213-46575847 lincRNA
ENSMUSG00000085380 (E130120K24Rik)
RIKEN cDNA E130120K24 gene 		ENSMUST00000129910 (E130120K24Rik-001) 46556303-46568344 lincRNA
ENSMUSG00000086168 (Gm15221)
predicted gene 15221 		ENSMUST00000144439 (Gm15221-001) 46436855-46454535 lincRNA
ENSMUSG00000086746 (Gm15222)
predicted gene 15222 		ENSMUST00000127359 (Gm15222-001) 46387519-46389282 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005GF_0001ENSG00000100526ENST00000216414ENST00000335183ENST00000395577ENST00000442975ENST00000458126ENST00000541304ENST00000543789ENST00000555837ENST00000556102ENST00000556305ENST00000611205ENST00000620759ENSG00000125378ENST00000245451ENST00000417573ENST00000558489ENST00000558961ENST00000558984ENST00000559087ENST00000559501ENST00000559642ENST00000609748ENSG00000224004ENST00000441945CIL_0005GF_0002ENSMUSG00000021835ENSMUST00000074077ENSMUST00000100676ENSMUST00000135408ENSMUSG00000037628ENSMUST00000067426ENSMUSG00000079261ENSMUST00000111826ENSMUST00000141358ENSMUST00000147092ENSMUSG00000085123ENSMUST00000151828ENSMUSG00000085380ENSMUST00000129910ENSMUSG00000086168ENSMUST00000144439ENSMUSG00000086746ENSMUST00000127359
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005GF_0001ENSG00000100526ENST00000216414ENST00000335183ENST00000395577ENST00000442975ENST00000458126ENST00000541304ENST00000543789ENST00000555837ENST00000556102ENST00000556305ENST00000611205ENST00000620759ENSG00000125378ENST00000245451ENST00000417573ENST00000558489ENST00000558961ENST00000558984ENST00000559087ENST00000559501ENST00000559642ENSG00000224004ENST00000441945CIL_0005GF_0002ENSMUSG00000021835ENSMUST00000074077ENSMUST00000100676ENSMUST00000135408ENSMUSG00000037628ENSMUST00000067426ENSMUSG00000079261ENSMUST00000111826ENSMUSG00000085123ENSMUST00000151828ENSMUSG00000085380ENSMUST00000129910ENSMUSG00000086168ENSMUST00000144439ENSMUSG00000086746ENSMUST00000127359
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000100526 ENST00000216414 N/A N/A N/A N/A N/A N/A 0.432±0.00 0.412±0.00 N/A N/A N/A 7.651±0.00 4.750±0.00 62.574±0.00
ENST00000335183 1.165±0.00 N/A N/A N/A 0.352±0.00 0.219±0.00 0.737±0.00 N/A N/A N/A N/A 3.539±0.00 1.059±0.29 32.927±0.03
ENST00000395577 0.885±0.00 0.674±0.00 N/A 1.500±0.00 N/A 4.348±3.32 0.295±0.20 N/A N/A N/A N/A 4.387±2.30 1.576±0.69 N/A
ENST00000442975 N/A N/A N/A 1.620±0.00 1.406±0.00 N/A 0.332±0.00 N/A N/A N/A N/A 1.177±0.00 N/A 38.850±0.00
ENST00000458126 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.869±0.00 N/A 12.985±0.00
ENST00000541304 N/A N/A N/A N/A N/A N/A N/A 0.055±0.00 N/A N/A N/A N/A N/A N/A
ENST00000543789 N/A N/A N/A 0.738±0.21 1.514±0.00 1.522±0.00 0.268±0.00 0.403±0.00 N/A N/A N/A 0.657±0.00 N/A N/A
ENST00000555837 0.695±0.00 1.415±0.00 N/A 0.706±0.18 0.980±0.31 0.659±0.00 N/A 0.303±0.00 0.080±0.00 0.215±0.00 N/A 1.456±0.42 0.458±0.00 30.451±0.00
ENST00000556102 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.733±0.00 N/A N/A
ENST00000556305 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.417±0.39 N/A N/A
ENST00000611205 N/A 1.253±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000620759 N/A N/A N/A N/A N/A N/A N/A N/A 0.109±0.00 N/A N/A N/A N/A N/A
ENSG00000125378 ENST00000245451 2.315±0.00 2.019±0.00 N/A N/A 3.203±0.00 8.829±0.00 N/A 2.414±0.00 0.609±0.00 6.745±0.00 N/A 1.672±0.57 6.014±2.69 2.307±0.00
ENST00000417573 N/A 0.731±0.00 N/A N/A 1.189±0.00 N/A N/A 1.067±0.00 N/A N/A N/A N/A N/A N/A
ENST00000558489 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.613±0.00 N/A N/A
ENST00000558961 N/A 4.231±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.218±0.00 N/A N/A
ENST00000558984 0.667±0.00 1.793±0.00 1.590±0.00 0.761±0.00 2.741±0.00 3.251±0.00 0.784±0.00 0.683±0.00 2.444±0.00 1.324±0.00 1.823±0.00 N/A N/A N/A
ENST00000559087 1.105±0.00 N/A N/A 0.179±0.00 N/A 3.732±0.00 0.948±0.00 2.200±0.00 N/A N/A 0.379±0.00 4.338±0.00 N/A 1.714±0.00
ENST00000559501 N/A N/A N/A N/A N/A N/A 1.059±0.00 N/A N/A 0.563±0.00 2.399±0.00 4.065±3.28 9.756±0.00 0.933±0.00
ENST00000559642 N/A N/A N/A N/A N/A N/A 0.376±0.00 N/A 4.350±0.00 1.149±0.00 N/A N/A N/A N/A
ENST00000609748 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000224004 ENST00000441945 N/A 0.029±0.00 N/A 0.015±0.00 0.029±0.00 0.027±0.00 N/A 0.117±0.00 0.013±0.00 N/A 0.025±0.00 N/A N/A 0.086±0.06
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021835 ENSMUST00000074077 3.015±2.04 2.309±0.67 13.396±0.51 0.433±0.36 1.023±0.23 19.281±2.23 1.750±0.42 6.720±2.42 0.511±0.21 18.108±4.00 0.489±0.18 2.581±0.96 1.303±0.63 0.193±0.08
ENSMUST00000100676 2.078±0.40 1.760±0.23 9.681±2.82 0.286±0.11 1.269±0.48 9.900±2.73 1.155±0.15 7.908±2.43 0.490±0.33 6.753±0.45 1.061±0.15 2.388±0.83 3.328±3.40 0.268±0.10
ENSMUST00000135408 N/A N/A N/A N/A 1.429±0.00 N/A N/A N/A 0.548±0.07 N/A N/A N/A N/A N/A
ENSMUSG00000037628 ENSMUST00000067426 0.440±0.12 0.123±0.00 0.685±0.09 1.564±1.07 0.260±0.13 2.691±0.76 0.275±0.16 0.271±0.22 16.794±15.92 0.382±0.12 0.127±0.09 1.412±0.64 4.981±4.08 89.309±30.63
ENSMUSG00000079261 ENSMUST00000111826 N/A N/A N/A N/A N/A N/A N/A 12.354±3.72 N/A N/A N/A N/A N/A N/A
ENSMUST00000141358 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147092 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000085123 ENSMUST00000151828 N/A N/A N/A 0.067±0.00 N/A N/A N/A N/A 0.095±0.02 N/A N/A 0.424±0.16 0.601±0.61 1.052±0.00
ENSMUSG00000085380 ENSMUST00000129910 N/A N/A N/A N/A 0.098±0.00 N/A N/A N/A 0.108±0.00 N/A N/A N/A 0.043±0.03 0.068±0.00
ENSMUSG00000086168 ENSMUST00000144439 N/A N/A 0.080±0.02 0.031±0.00 N/A N/A N/A N/A N/A N/A N/A 0.184±0.00 0.198±0.00 0.148±0.00
ENSMUSG00000086746 ENSMUST00000127359 0.818±0.39 0.411±0.21 2.730±0.00 0.271±0.00 N/A 0.276±0.00 N/A 1.845±0.49 0.232±0.09 1.301±0.26 0.337±0.11 0.651±0.27 1.302±0.75 0.383±0.21

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